Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0258
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   9.2  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 193 LFSKIDILFFLCFPVWHWQYIVTI 264
           + S + ILFF+C+  +H Q ++ +
Sbjct: 271 MLSAVVILFFICWAPFHTQRLLYV 294


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 608 TQPPLCFQYYVKVEVIKNKDW 546
           T PP  FQ    V+V+K+ +W
Sbjct: 118 TVPPDTFQSIALVDVVKSANW 138


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 608 TQPPLCFQYYVKVEVIKNKDW 546
           T PP  FQ    V+V+K+ +W
Sbjct: 208 TVPPDTFQSIALVDVVKSANW 228


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 634  PLQCIGHFPLHFMSSYGL 687
            P  C+   P HF++SY L
Sbjct: 1612 PKNCLFRKPEHFVASYAL 1629


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 149 YSKHNPIP*LNCQNYFFQ 202
           YS+  P   + CQN+F+Q
Sbjct: 186 YSETGPSHCVVCQNFFYQ 203


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -3

Query: 721 TTKCPNYTQNMSDHTSS*SVKEND 650
           TT  PN TQN S  T    V E D
Sbjct: 674 TTTTPNTTQNASATTPPPQVDEVD 697


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 69  HCLTLTAINFSLF 31
           HC+T+T  +F LF
Sbjct: 78  HCMTITFASFLLF 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,206
Number of Sequences: 438
Number of extensions: 5292
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)