Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0258
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit (...    28   7.5  
At2g01275.1 68415.m00041 zinc finger (C3HC4-type RING finger) fa...    28   7.5  

>At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit
           (IRX3) identical to gi:5230423
          Length = 1026

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 248 CQCQTGKQRKNKMSIFEKSSFGNSIMGLGCALNIKTHLQAKL 123
           C C  G++RKNK   F K+     +  LG A   K HL +++
Sbjct: 624 CPC-FGRRRKNKK--FSKNDMNGDVAALGGAEGDKEHLMSEM 662


>At2g01275.1 68415.m00041 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger); contains PROSITE
           PS00190: Cytochrome c family heme-binding site signature
          Length = 259

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 628 PFPLQCIGHFPLHFMSSYGLT 690
           P PL  +GH PLHF  ++G++
Sbjct: 115 PPPLLELGHVPLHFRGNWGIS 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,361,293
Number of Sequences: 28952
Number of extensions: 342561
Number of successful extensions: 680
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)