Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0257
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0871 + 28396964-28399843                                         30   1.7  
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493...    29   3.9  
06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910...    28   9.1  
05_01_0074 + 506803-507963                                             28   9.1  
03_02_0665 - 10268959-10269148,10269344-10269936,10270572-102710...    28   9.1  

>03_05_0871 + 28396964-28399843
          Length = 959

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +1

Query: 481 SAYRRPSSHSVDDVRVRRAQRCAHLLFEHVVQSAAQRVEVGRVGDG 618
           S +RR S H  DDV V R +  A ++ + +++  A R  VG VG G
Sbjct: 150 SLWRRSSCHLGDDVVVGREEE-AGMIIDRLLRCTAHREVVGIVGMG 194


>02_05_0272 -
           27348537-27348728,27349035-27349192,27349292-27349323,
           27349420-27349514,27349614-27349687,27349800-27349878,
           27350015-27350078,27350156-27350218,27350300-27350442,
           27350566-27350703,27350792-27350913,27350993-27351158,
           27351276-27351398,27351609-27351680,27351773-27351880,
           27352481-27352597,27352727-27352865,27352974-27353080,
           27353167-27353276,27353892-27354025,27354106-27354255,
           27354329-27354549,27354647-27355318
          Length = 1092

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/37 (51%), Positives = 20/37 (54%)
 Frame = -2

Query: 619 AHPQRAQLQHAGRRTGLHVQTEGGRIAERGAL*RHQP 509
           A+PQ AQ   AGR  G H Q  GGR   RG    HQP
Sbjct: 47  ANPQYAQ--QAGRGGGQH-QGRGGRYQGRGGPTSHQP 80


>06_01_1105 +
           9102059-9102167,9103770-9103907,9104125-9104267,
           9104362-9104515,9104610-9104839,9105382-9105471,
           9105606-9105779,9105873-9106010,9106212-9106349,
           9106450-9106511,9106744-9106972,9108531-9109364
          Length = 812

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +2

Query: 494 GRVVIRLMTSECAALSDAPTFCLNM*---SSPPPSVLKLGALGMGAGRVPDRERLGRSGR 664
           GR V+  M  +   L D  TF + M    SSPPP +L +G L + + R    ER G  GR
Sbjct: 710 GRCVV--MELDFGVLCDNITFFVAMAPHPSSPPPPLLCVGGL-LPSDRSGRGERRGWEGR 766

Query: 665 G 667
           G
Sbjct: 767 G 767


>05_01_0074 + 506803-507963
          Length = 386

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +1

Query: 481 SAY-RRPSSHSVDDVRVRRAQRCA 549
           +AY RRP +H  +D+R+RR +R A
Sbjct: 61  AAYLRRPRAHHANDLRLRRTRRAA 84


>03_02_0665 -
           10268959-10269148,10269344-10269936,10270572-10271004,
           10271172-10272040,10272121-10272915,10273612-10273829,
           10274931-10275230,10276834-10277161
          Length = 1241

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 26/88 (29%), Positives = 36/88 (40%)
 Frame = +2

Query: 479 VQLTAGRVVIRLMTSECAALSDAPTFCLNM*SSPPPSVLKLGALGMGAGRVPDRERLGRS 658
           ++L   R+V+ L       L+D P   L   S+ PP+   + A    A   P R  +G  
Sbjct: 1   MELLTSRIVVAL--GGIRRLTDVPPL-LRWGSATPPTSRTVVAPEGSADPQPYRRCVGDP 57

Query: 659 GRGCYCGTS*PCLRRRAGFPEARXCGVP 742
              C C    P  RRR+  P  R  G P
Sbjct: 58  PT-CRCAGEKPRERRRSHIPSHRAAGEP 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,731,148
Number of Sequences: 37544
Number of extensions: 327256
Number of successful extensions: 854
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)