Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0257
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20454| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_12341| Best HMM Match : Death (HMM E-Value=3.3e-08)                 28   7.0  
SB_21436| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-13)          28   9.2  
SB_38463| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-17)         28   9.2  
SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)                   28   9.2  

>SB_20454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 693

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 572 SSPPPSVLKLGALGMGAGRVPD-RERLGRSGRGCYCGT 682
           S   PS+LKL  L    GR+P+ ++ LGR  R   CGT
Sbjct: 473 SCTSPSLLKLQTLKQTGGRIPENKDSLGRDRRDS-CGT 509


>SB_12341| Best HMM Match : Death (HMM E-Value=3.3e-08)
          Length = 194

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 652 PKAFAIRNSPSAHPQRAQLQHAGRRTGLH 566
           PK F   +SP A+P+    Q+ GR T +H
Sbjct: 41  PKQFTNISSPKAYPECTVFQNGGRSTIIH 69


>SB_21436| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-13)
          Length = 240

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
 Frame = +2

Query: 464 RRLEQVQLTAGRVVIRLMTSECAALSDAPTFCLNM*SSPPPSVLK-LGA------LGMGA 622
           +R++   +   R ++++  S  A + D  +F +    +  PS+LK +G       LGM  
Sbjct: 46  KRMKVSHVNLPRKLVKMENSVYADIRDGESFLMK--KTLTPSILKCIGCVVNQYPLGMED 103

Query: 623 GRVPDRERLGRSGRG 667
           GR+PD      S RG
Sbjct: 104 GRIPDSSITASSSRG 118


>SB_38463| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-17)
          Length = 828

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +2

Query: 404 RSVKRRI-ELLEAGVEVERAGRRLEQVQLTAGR 499
           R +KR+I EL EAG++V R+G ++   +L A R
Sbjct: 41  RRLKRKISELKEAGLKVGRSGMQISMRKLNARR 73


>SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)
          Length = 808

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 713 SQLGVAGKVNLFHNNNHDLSAQ 648
           S L + G VN+FHN   DL++Q
Sbjct: 614 SDLTIDGHVNIFHNQGTDLNSQ 635


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,832,889
Number of Sequences: 59808
Number of extensions: 337735
Number of successful extensions: 789
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)