Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0257
         (746 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   4.3  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    24   4.3  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    24   4.3  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 484 AYRRPS-SHSVDDVRVRRAQRCAHLLFEH 567
           A+++P+ SHSV    V R+  C   + EH
Sbjct: 455 AFKQPAFSHSVCSTEVHRSCFCVRFIAEH 483


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 484 AYRRPS-SHSVDDVRVRRAQRCAHLLFEH 567
           A+++P+ SHSV    V R+  C   + EH
Sbjct: 455 AFKQPAFSHSVCSTEVHRSCFCVRFIAEH 483


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 671 NNHDLSAQGVRDQELAQRPSPTRPTSTRWAADWTTCSNRRWAHR 540
           N  D  A  +R QE   R +       +W A+  T  + RWAHR
Sbjct: 857 NRTDTRAN-IRKQE---RQATIEQWQQQWDAEADTSRHTRWAHR 896


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,856
Number of Sequences: 2352
Number of extensions: 11553
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76923555
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)