Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0257
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40200.1 68415.m04943 basic helix-loop-helix (bHLH) family pr...    28   5.7  
At2g35075.1 68415.m04303 hypothetical protein                          28   7.6  
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro...    28   7.6  
At1g36180.1 68414.m04497 acetyl-CoA carboxylase 2 (ACC2) nearly ...    28   7.6  
At1g36160.1 68414.m04495 acetyl-CoA carboxylase 1 (ACC1) nearly ...    28   7.6  

>At2g40200.1 68415.m04943 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 254

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 441 ALKSSELDGDWNRFSLPPAE*SFG 512
           +L+S   D DWNRF+L  +  SFG
Sbjct: 22  SLQSESSDSDWNRFNLGFSSSSFG 45


>At2g35075.1 68415.m04303 hypothetical protein
          Length = 485

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = -2

Query: 586 GRRTGLHVQTEGGRIAERGAL*RHQPNDYSAGGKLNLFQSPSSSLDFNAGFKKFDT 419
           G+R    V+   G  AE       +    + GG +N  QSP      NAGF   DT
Sbjct: 425 GKRFAEDVKKVDGEYAELAVSNGTRLESKTKGGLMNFMQSPGLVESTNAGFFLIDT 480


>At1g70140.1 68414.m08071 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 760

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 578 PPPSVLKLGALGMGAGRVPDRERLGRSG 661
           PPP V K+GAL   A + P     G SG
Sbjct: 270 PPPPVKKVGALSSSASKPPPAPVRGASG 297


>At1g36180.1 68414.m04497 acetyl-CoA carboxylase 2 (ACC2) nearly
           identical to acetyl-CoA carboxylase 2 (ACC2)
           [Arabidopsis thaliana] GI:11869928
          Length = 1755

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +2

Query: 335 MISNYQDYLEEFREGESYIGLPRRSVKRRIELLEAGVEVERAGRRLEQVQLTAGRVVIRL 514
           ++S+Y  YLE+ +    +I L    V   IE  +  ++V R G    +++++   VV  +
Sbjct: 74  VVSDYVGYLEKGQIPPKHISLVHSQVSLNIEGSKYTIDVVRGGSGTYRLRMSNSEVVAEI 133

Query: 515 MT 520
            T
Sbjct: 134 HT 135


>At1g36160.1 68414.m04495 acetyl-CoA carboxylase 1 (ACC1) nearly
           identical to acetyl-CoA carboxylase 1 (ACC1)
           [Arabidopsis thaliana] GI:11869927
          Length = 2247

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +2

Query: 335 MISNYQDYLEEFREGESYIGLPRRSVKRRIELLEAGVEVERAGRRLEQVQLTAGRVVIRL 514
           ++S+Y  YLE+ +    +I L    V   IE  +  ++V R G    ++++    VV  +
Sbjct: 572 VVSDYVGYLEKGQIPPKHISLVHSQVSLNIEGSKYTIDVVRGGSGTYRLRMNKSEVVAEI 631

Query: 515 MT 520
            T
Sbjct: 632 HT 633


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,107,138
Number of Sequences: 28952
Number of extensions: 237001
Number of successful extensions: 577
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)