Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0256
         (654 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...   112   2e-27
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   5.1  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score =  112 bits (270), Expect = 2e-27
 Identities = 66/165 (40%), Positives = 97/165 (58%), Gaps = 8/165 (4%)
 Frame = +2

Query: 8   AYILPAIVHII---NQPRLLRDDG-PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIF 175
           A++LP I +++   N P    +   P+V++++PTRELA QI     +F  +  V+   I+
Sbjct: 211 AFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIY 270

Query: 176 GGAPKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQI 355
           GG     Q   +  G  I++ATPGR  DF+ +   +     Y VLDEADRMLDMGF   +
Sbjct: 271 GGTSTNHQRGRILGGCHILVATPGRLKDFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDV 330

Query: 356 RKII-EQIRP---DRQVLMWSATWPREVQNLAEEFLHDYIQINIG 478
            +++  Q  P   +RQ LM+SAT+P EVQ LA +FL +YI I +G
Sbjct: 331 EEMLSHQSMPATGERQTLMFSATFPEEVQQLAGKFLLNYIFIAVG 375


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 3   PWHTFY 20
           PWHTFY
Sbjct: 486 PWHTFY 491


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,307
Number of Sequences: 336
Number of extensions: 3242
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)