Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0256
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 255 4e-69
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 161 6e-41
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 131 7e-32
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 128 9e-31
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 124 9e-30
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 109 5e-25
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 100 2e-22
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 97 3e-21
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 97 3e-21
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 94 2e-20
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 93 4e-20
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 91 1e-19
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 84 2e-17
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 83 4e-17
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 77 3e-15
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 74 2e-14
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 72 8e-14
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 69 4e-13
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 66 3e-12
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 65 7e-12
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 62 7e-11
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 57 3e-09
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 51 1e-07
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 36 0.005
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 27 2.4
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 27 2.4
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 27 3.1
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 4.1
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 26 4.1
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo... 26 5.5
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 25 7.2
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 255 bits (625), Expect = 4e-69
Identities = 119/172 (69%), Positives = 143/172 (83%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGA 184
L+Y LPAIVHI QP L DGPIVLVLAPTRELA QIQQ +FG+S +RNTC++GG
Sbjct: 174 LSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGV 233
Query: 185 PKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKI 364
P+GPQ R L RGVEI IATPGR LD L+ TNLRR TYLVLDEADRMLDMGFEPQIRKI
Sbjct: 234 PRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKI 293
Query: 365 IEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGSLELSANHNISRLL 520
++QIRPDRQ +M+SATWP+EVQ LA ++L+DYIQ+ +GSL+L+A+HNI +++
Sbjct: 294 VDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIV 345
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 161 bits (392), Expect = 6e-41
Identities = 79/168 (47%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGA 184
+A++LP HI +Q L +GPI +++ PTRELA QI + F + +++R C +GGA
Sbjct: 470 IAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGA 529
Query: 185 PKGPQGRCLERGVEIVIATPGRTLDFLEKET---TNLRRCTYLVLDEADRMLDMGFEPQI 355
P Q L+RG EIV+ TPGR +D L TNL RCTYLVLDEADRM D+GFEPQ+
Sbjct: 530 PIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQV 589
Query: 356 RKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGSLELSAN 499
+II IRPDRQ +++SAT+PR ++ LA + L ++I +G + A+
Sbjct: 590 MRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVAS 637
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 131 bits (317), Expect = 7e-32
Identities = 68/162 (41%), Positives = 105/162 (64%), Gaps = 4/162 (2%)
Frame = +2
Query: 71 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 250
P L+LAPTREL QI + + +F VR ++GGA Q R +++G +++ ATPGR
Sbjct: 256 PTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGR 315
Query: 251 TLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIR----PDRQVLMWSATWP 418
+D +++ +L +LVLDEADRMLDMGFEPQIR I+E +RQ LM+SAT+P
Sbjct: 316 LVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFP 375
Query: 419 REVQNLAEEFLHDYIQINIGSLELSANHNISRLLMFXRNGRR 544
R++Q LA +FL DY+ +++G + S + NI++ ++ + +
Sbjct: 376 RDIQLLARDFLKDYVFLSVGRVG-STSENITQKVVHVEDSEK 416
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 128 bits (308), Expect = 9e-31
Identities = 70/156 (44%), Positives = 96/156 (61%), Gaps = 6/156 (3%)
Frame = +2
Query: 71 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 250
P VLV++PTRELA Q + N Q +++ ++GGAPK Q R + ++I TPGR
Sbjct: 237 PRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAA-KNASVIIGTPGR 295
Query: 251 TLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD------RQVLMWSAT 412
LD + + + + YLVLDEADRMLD GFE IR II PD RQ + +SAT
Sbjct: 296 LLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISH-TPDPTRNGSRQTVFFSAT 354
Query: 413 WPREVQNLAEEFLHDYIQINIGSLELSANHNISRLL 520
WP V+ LA FL D ++I IGS EL+A+ NI++++
Sbjct: 355 WPESVRALAATFLKDPVKITIGSDELAASQNITQIV 390
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 124 bits (300), Expect = 9e-30
Identities = 75/201 (37%), Positives = 109/201 (54%), Gaps = 22/201 (10%)
Frame = +2
Query: 8 AYILPAIVHIINQPRLLRDD---GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFG 178
A+I+P I+ I P L + GP +VLAPTRELAQQIQ N+F + + R + G
Sbjct: 302 AFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVG 361
Query: 179 GAPKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIR 358
G Q + +G IV+ATPGR LD LE+ L +CTY+V+DEADRMLDMGFE +
Sbjct: 362 GHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVN 421
Query: 359 KIIEQIRPD-------------------RQVLMWSATWPREVQNLAEEFLHDYIQINIGS 481
KI+ + RQ +M+SAT P V NLA+ +L + + + IG+
Sbjct: 422 KILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGN 481
Query: 482 LELSANHNISRLLMFXRNGRR 544
+ + + R+ M + ++
Sbjct: 482 IGQAVDRVEQRVEMISDDSKK 502
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 109 bits (261), Expect = 5e-25
Identities = 65/174 (37%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
Frame = +2
Query: 8 AYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAP 187
A+ LP I + N P +VLAPTRELA QI + G SI VR+ I GG
Sbjct: 99 AFALPVIQELWNNPSPF-----FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMD 153
Query: 188 KGPQGRCLERGVEIVIATPGRTLDFLEK-ETTNLRRCTYLVLDEADRMLDMGFEPQIRKI 364
Q L + +++ TPGR +D LE + +L+ YL++DEADR+LDM F P I KI
Sbjct: 154 MVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKI 213
Query: 365 IEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGSLELSANHNISRLLMF 526
++ I +R+ L++SAT +V+ L LH +++ + S + + I R L F
Sbjct: 214 LKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFF 267
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 100 bits (239), Expect = 2e-22
Identities = 54/138 (39%), Positives = 77/138 (55%)
Frame = +2
Query: 80 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRTLD 259
L+LAPTRELAQQIQ+V G ++V GG L+ GV +V+ TPGR D
Sbjct: 91 LILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHD 150
Query: 260 FLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLA 439
+++ VLDEAD ML GF+ QI I + + P QV++ SAT P++V +
Sbjct: 151 MIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVT 210
Query: 440 EEFLHDYIQINIGSLELS 493
+F+ D I+I + EL+
Sbjct: 211 TKFMRDPIRILVKKDELT 228
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 96.7 bits (230), Expect = 3e-21
Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 7/161 (4%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLL--RDDGPIVLVLAPTRELAQQIQQVANEFGQS--IHVRNTC- 169
LAY+LP + +I P+ L R G +++APTREL QQI VAN+ + H +C
Sbjct: 193 LAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCN 252
Query: 170 IFGGAPKGPQGRCLERGVEIVIATPGRTLDFLEK-ETTNLRRCTYLVLDEADRMLDMGFE 346
+ GG K + + +GV I+I TPGR D LE E ++ + ++VLDE DR++DMGFE
Sbjct: 253 VIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFE 312
Query: 347 PQIRKIIEQIRPDRQVLMWSATWP-REVQNLAEEFLHDYIQ 466
+ KI+ + ++ + P R+V L + D ++
Sbjct: 313 ETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVK 353
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 96.7 bits (230), Expect = 3e-21
Identities = 53/156 (33%), Positives = 84/156 (53%)
Frame = +2
Query: 8 AYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAP 187
A+++P I H+ + L + L+L+P RELA Q +V +F + +R+ I GG
Sbjct: 122 AFVIPMIEHLKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVS 178
Query: 188 KGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKII 367
Q L +IV+ATPGR L + L Y+V DEADR+ +MGF Q+ +I+
Sbjct: 179 LEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEIL 238
Query: 368 EQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINI 475
+ RQ L++SAT PR + + A+ L D + + +
Sbjct: 239 HALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRL 274
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 93.9 bits (223), Expect = 2e-20
Identities = 50/138 (36%), Positives = 76/138 (55%)
Frame = +2
Query: 80 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRTLD 259
L+L+PTRELA QIQ V G ++V+ GG G + L+ G +V TPGR D
Sbjct: 93 LILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTD 152
Query: 260 FLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLA 439
+ + R L+LDEAD +L+ GF+ QI I + P QV++ SAT P++V +
Sbjct: 153 MIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMT 212
Query: 440 EEFLHDYIQINIGSLELS 493
+F + ++I + EL+
Sbjct: 213 NKFTTNPVRILVKRDELT 230
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 92.7 bits (220), Expect = 4e-20
Identities = 55/147 (37%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGA 184
LA+++P I ++ + +G V++++PTRELA QI VA E + H + GGA
Sbjct: 141 LAFLIPTI-EMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGA 199
Query: 185 PKGPQGRCLERGVEIVIATPGRTLDFLEK-ETTNLRRCTYLVLDEADRMLDMGFEPQIRK 361
+ + L +GV +++ATPGR LD L+ + R LV+DEADR+L++GFE ++R+
Sbjct: 200 NRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQ 259
Query: 362 IIEQI-RPDRQVLMWSATWPREVQNLA 439
I++ + +RQ L++SAT +V++LA
Sbjct: 260 IMKILPSENRQTLLFSATQTTKVEDLA 286
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 91.1 bits (216), Expect = 1e-19
Identities = 48/132 (36%), Positives = 72/132 (54%)
Frame = +2
Query: 80 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRTLD 259
L+L PTRELA Q QV G+ ++V+ GG L V IV+ TPGR LD
Sbjct: 116 LILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD 175
Query: 260 FLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLA 439
K + CT V+DEAD++L F P I +++ +RQ+ ++SAT+P V+N
Sbjct: 176 LAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFM 235
Query: 440 EEFLHDYIQINI 475
++ L+ +IN+
Sbjct: 236 DKHLNKPYEINL 247
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 83.8 bits (198), Expect = 2e-17
Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 1/164 (0%)
Frame = +2
Query: 8 AYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAP 187
A+I+P + ++ +P+ + VL+L PTRELA Q VA + + GG
Sbjct: 312 AFIVPILERLLYRPKKVPTTR--VLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLS 369
Query: 188 KGPQGRCLERGVEIVIATPGRTLDFL-EKETTNLRRCTYLVLDEADRMLDMGFEPQIRKI 364
Q + L + +IVIATPGR +D + + + +V+DEADRML+ GF ++ +I
Sbjct: 370 LKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEI 429
Query: 365 IEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGSLELSA 496
I+ RQ +++SAT +V +L L+ +++ + + + +A
Sbjct: 430 IQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTA 473
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 82.6 bits (195), Expect = 4e-17
Identities = 53/152 (34%), Positives = 81/152 (53%), Gaps = 1/152 (0%)
Frame = +2
Query: 71 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 250
P + LAP+RELA+QI V E G+ V+ FG P+G ++ +IVI TPG
Sbjct: 185 PQAICLAPSRELARQIMDVVTEMGKYTEVKTA--FGIKDSVPKGAKID--AQIVIGTPGT 240
Query: 251 TLDFLEKETTNLRRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQVLMWSATWPREV 427
+D +++ + R VLDEAD MLD G Q +I + + Q++++SAT+ V
Sbjct: 241 VMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERV 300
Query: 428 QNLAEEFLHDYIQINIGSLELSANHNISRLLM 523
+ AE F + +I + + ELS I +L M
Sbjct: 301 EKYAERFAPNANEIRLKTEELSV-EGIKQLYM 331
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 76.6 bits (180), Expect = 3e-15
Identities = 52/159 (32%), Positives = 85/159 (53%), Gaps = 3/159 (1%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGA 184
LA+I+P I ++ + + DG LV++PTRELA Q + + G+ I GG
Sbjct: 91 LAFIVPLIENLYRK-KWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGN 149
Query: 185 PKGPQGRCLERGVEIVIATPGRTLDFLEKETT-NLRRCTYLVLDEADRMLDMGFEPQIRK 361
+ L R + I++ TPGR L +++ + L+LDEADR+LDMGF +
Sbjct: 150 NYKEEKERLSR-MNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDA 208
Query: 362 IIEQIRPDRQVLMWSATWPREVQNLAEEFLH--DYIQIN 472
I+ + RQ +++SAT + V++LA L D+I ++
Sbjct: 209 IVSSLPVHRQTMLFSATQTKSVKDLARLSLQNPDFISVH 247
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 73.7 bits (173), Expect = 2e-14
Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 4/160 (2%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGA 184
LA++L A ++ L ++L+PTRELA QI + A + +R + GG
Sbjct: 91 LAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGN 150
Query: 185 PKGPQGRCLERG-VEIVIATPGRTLDFLEKETTNLRRCT-YLVLDEADRMLDMGFEPQIR 358
K + + RG ++IATPGR D L+ T +LDEADR++DMGF I
Sbjct: 151 SKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESIL 210
Query: 359 KIIEQIRPDR-QVLMWSATWPREVQNLAEEFL-HDYIQIN 472
I E + + + L +SAT P +V N+ L D+ IN
Sbjct: 211 NIHEAVTTTKTRKLCFSATMPPKVSNVFRGILGTDFKLIN 250
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 71.7 bits (168), Expect = 8e-14
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 6/129 (4%)
Frame = +2
Query: 68 GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPG 247
G L+L PTRELA QI + G ++++++ I GG Q L + +V+ATPG
Sbjct: 75 GIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPG 134
Query: 248 RTLDFL----EKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI--RPDRQVLMWSA 409
R D + E+ LRR +LV+DEADR+L F + + DRQ L+++A
Sbjct: 135 RLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTA 194
Query: 410 TWPREVQNL 436
T ++ L
Sbjct: 195 TVTDAIRQL 203
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 69.3 bits (162), Expect = 4e-13
Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 6/123 (4%)
Frame = +2
Query: 80 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRTLD 259
LV+APTRELA QI Q S ++R I GG Q R L + +V+ATPGR
Sbjct: 196 LVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWS 255
Query: 260 FLEKE--TTNLRRCTYLVLDEADRMLDMGFEPQIRKIIE----QIRPDRQVLMWSATWPR 421
+ + T N ++ LVLDEADR+L ++ K++E + RQ ++SAT+
Sbjct: 256 VINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDE 315
Query: 422 EVQ 430
+Q
Sbjct: 316 GLQ 318
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 66.5 bits (155), Expect = 3e-12
Identities = 42/143 (29%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Frame = +2
Query: 65 DGPI-VLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQG----RCLERGVEI 229
DG + VLVL TRELA QI+ F + + T +F G Q + + I
Sbjct: 117 DGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHI 176
Query: 230 VIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQVLMWS 406
V+ATPGR + ++ + + VLDE D++L+ + I+++ P +QV+M+S
Sbjct: 177 VVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFS 236
Query: 407 ATWPREVQNLAEEFLHDYIQINI 475
AT E++ + ++F+ + ++I +
Sbjct: 237 ATLSNEIRPICKKFMQNPLEIYV 259
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 65.3 bits (152), Expect = 7e-12
Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 3/146 (2%)
Frame = +2
Query: 8 AYILPAIVHIINQPRLLRDD-GPIVLVLAPTRELAQQIQQVANEFGQ--SIHVRNTCIFG 178
AY++P + ++ Q ++ + G L+L PTRELAQQ+ V + S H+R +
Sbjct: 67 AYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVAT 126
Query: 179 GAPKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIR 358
+ Q L +IVIATP R + + L + +LV+DEAD ML G+ ++
Sbjct: 127 NSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMK 186
Query: 359 KIIEQIRPDRQVLMWSATWPREVQNL 436
+ + Q + SAT + + +L
Sbjct: 187 TLSRSLPRGTQSFLMSATLSKNIASL 212
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 62.1 bits (144), Expect = 7e-11
Identities = 49/146 (33%), Positives = 71/146 (48%), Gaps = 10/146 (6%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEF---------GQSIHV 157
LAY+LP + R + G L++APTRELA QI V E G V
Sbjct: 53 LAYLLPCFDKVTR--RDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLV 110
Query: 158 RNTCIFG-GAPKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLD 334
+ I G G E+ +VI TPGR + L ++ + L+LDEAD ++D
Sbjct: 111 ADMYIGGKGTLTNDLASFREKNPSVVIGTPGRLNEMLSHISS--KHLEILILDEADTLID 168
Query: 335 MGFEPQIRKIIEQIRPDRQVLMWSAT 412
MGF+ ++ II Q+ R+ ++SAT
Sbjct: 169 MGFQRTLQSIISQLPKQRRTGLFSAT 194
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 56.8 bits (131), Expect = 3e-09
Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 8/182 (4%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANE--FGQSIHV-----RN 163
+AY+ P I+ + +L G +++APTREL +QI + A + FG S+ + N
Sbjct: 98 IAYLFP----ILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSN 153
Query: 164 TCIFGGAPKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGF 343
I APK L ++ I TP R + ++ + + + V+DEADR+ + GF
Sbjct: 154 EKIQEKAPK------LREKYDMCIGTPMRLVQAIQTGLS-FEKVEFFVMDEADRLFEPGF 206
Query: 344 EPQIRKIIEQIRPDRQVL-MWSATWPREVQNLAEEFLHDYIQINIGSLELSANHNISRLL 520
Q I+ ++SAT P V+ LA+ D I+I +G L+ +A +I + L
Sbjct: 207 IEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRIIVG-LKDAATDSIDQRL 265
Query: 521 MF 526
+F
Sbjct: 266 LF 267
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 51.2 bits (117), Expect = 1e-07
Identities = 43/163 (26%), Positives = 81/163 (49%), Gaps = 12/163 (7%)
Frame = +2
Query: 5 LAYILPAIVHIINQ--PRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFG 178
L+Y++P + + ++ PRL +V+ PTREL Q+ + E+ S C +
Sbjct: 188 LSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQVAKTF-EYYMSGAGLQVCAWT 240
Query: 179 GAPK---------GPQGRCLERGVEIVIATPGRTLDFLEK-ETTNLRRCTYLVLDEADRM 328
G G + C ++++++TPGR +D + E+ +L+ Y+V+DEADR+
Sbjct: 241 GQKSLRHETYQLNGDENECR---IDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRL 297
Query: 329 LDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHD 457
LD F+ + ++ +I + + S + QN++ FL D
Sbjct: 298 LDQSFQDWVDTVMMEISHPKCLQNKSNILDLD-QNISPTFLPD 339
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = +2
Query: 194 PQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYL 304
P GRCL++G+E VI TP R L ++ + NL+R +++
Sbjct: 132 PCGRCLKKGLECVIETPPRLLMNKDEISLNLQRLSHM 168
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -3
Query: 322 ISLIQHQISASAQVRCLLLQKIKSSTRSSNNNFHSPLKTSALWSLWSTTK 173
+ LIQ ++++ QK KS T SS NNF L+ S+L S++ K
Sbjct: 241 LELIQELKHEGSRLKQAANQKRKSKTVSSKNNFQR-LQNSSLHSIFLDPK 289
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 398 MWS-ATWPREVQNLAEEFLHDYIQINIGSLELSANHNISRLLMF 526
+WS A + R LA+E L Y+ + I LE +N+S+ LMF
Sbjct: 330 IWSNAQFLRSYTLLAQESLTIYLLLFIPKLEAKYLNNLSKSLMF 373
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 26.6 bits (56), Expect = 3.1
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -3
Query: 397 QYLSIRSNLFNNLPDLRLEAH-VQHSISLIQHQISASAQVRCLLLQKIKSSTRSSNNNFH 221
Q+ LF N PDL + +Q IS+I+++ S A V LLQ + S + ++N H
Sbjct: 1005 QFFEKAYKLFQN-PDLEVSQETLQVIISVIKNRRSCIADVYNELLQGLISKSSVDSSNVH 1063
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 394 YLSIRSNLFNNLPDLRLEAHVQHSISLI-QHQISASAQVRCLLLQKIKSSTRSSN 233
+L + N+ + L L+ H + I LI QH + A+ LLL I S +SS+
Sbjct: 512 FLYLEDNMPIDAFHLYLKLHSELCIDLILQHNLYDEARASVLLLMLISSKGKSSD 566
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 103 LSCWSQHKDYWTIIS 59
L CWS H DY T++S
Sbjct: 114 LDCWSCHTDYPTVLS 128
>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
Mag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 228
Score = 25.8 bits (54), Expect = 5.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -3
Query: 220 SPLKTSALWSLWSTTK 173
+P +T+A W LW T+K
Sbjct: 200 APFRTAAAWYLWKTSK 215
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -3
Query: 223 HSPLKTSALWSLWSTTKDTSVPHVDALTKFIGNLLYLLG 107
HSP+ TS++W+L + D + + L++ + +++ LG
Sbjct: 184 HSPMPTSSMWNLSTFQPDVTAIR-EQLSRCLDHIINSLG 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,616,247
Number of Sequences: 5004
Number of extensions: 52104
Number of successful extensions: 178
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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