Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0256
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      115   5e-28
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   1.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  115 bits (276), Expect = 5e-28
 Identities = 63/140 (45%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
 Frame = +2

Query: 71  PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 250
           P V++++PTREL  QI Q   +F  +  ++    +GG     Q   L  G  I++ATPGR
Sbjct: 274 PQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVATPGR 333

Query: 251 TLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKII--EQIRP--DRQVLMWSATWP 418
            LDF+EK         +LVLDEADRMLDMGF P I K++  E + P  +RQ LM+SAT+P
Sbjct: 334 LLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLGERQTLMFSATFP 393

Query: 419 REVQNLAEEFLHDYIQINIG 478
            EVQ+LA  FL++Y+ + +G
Sbjct: 394 DEVQHLARRFLNNYLFLAVG 413


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect(2) = 1.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 263 LEKETTNLRRCTYLVLDEADRML 331
           L++E  NL     L+ DE++RML
Sbjct: 28  LKQENLNLDDIDSLLEDESERML 50



 Score = 20.6 bits (41), Expect(2) = 1.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 320 DRMLDMGFEPQIRKIIEQ 373
           D  +DM  +  IRKII Q
Sbjct: 83  DTDMDMDLKDSIRKIIRQ 100


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -3

Query: 292 SAQVRCLLLQKIKSSTRSSNNNFHSPL----KTSALWSLWSTTKDTSVPH 155
           S + +C +LQK++    SS+    SP+     T     L ST   T+ PH
Sbjct: 307 SHESQCPMLQKLEKPVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPH 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,490
Number of Sequences: 438
Number of extensions: 3621
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)