Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0256
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 250 8e-67
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 250 8e-67
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 240 7e-64
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 188 2e-48
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 188 2e-48
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 188 2e-48
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 187 5e-48
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 184 5e-47
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 179 1e-45
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 164 4e-41
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 164 4e-41
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 159 2e-39
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 149 2e-36
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 147 6e-36
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 138 4e-33
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 138 4e-33
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 124 5e-29
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 119 1e-27
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 118 5e-27
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 117 6e-27
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 113 1e-25
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 111 4e-25
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 107 6e-24
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 102 2e-22
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 102 2e-22
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 100 1e-21
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 98 5e-21
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 97 7e-21
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 96 2e-20
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 95 4e-20
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 95 4e-20
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 95 4e-20
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 94 8e-20
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 93 2e-19
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 92 3e-19
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 91 6e-19
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 91 8e-19
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 91 8e-19
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 90 1e-18
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 90 1e-18
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 90 1e-18
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 89 2e-18
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 88 4e-18
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 87 1e-17
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 87 1e-17
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 87 1e-17
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 86 2e-17
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 86 2e-17
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 83 2e-16
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 83 2e-16
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 82 3e-16
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 73 2e-13
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 66 1e-11
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 66 2e-11
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 66 2e-11
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 66 2e-11
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 66 2e-11
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 62 4e-10
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 61 7e-10
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 56 2e-08
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 53 2e-07
At2g28600.1 68415.m03476 expressed protein 48 5e-06
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 48 7e-06
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 42 3e-04
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 36 0.031
At3g07040.1 68416.m00836 disease resistance protein RPM1 (CC-NBS... 31 0.51
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 29 2.0
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 29 2.0
At1g77680.1 68414.m09044 ribonuclease II family protein weak sim... 28 4.7
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 28 6.2
At3g53180.1 68416.m05860 glutamine synthetase, putative similar ... 28 6.2
At5g55740.1 68418.m06948 pentatricopeptide (PPR) repeat-containi... 27 8.2
At4g38630.1 68417.m05467 26S proteasome regulatory subunit S5A (... 27 8.2
At3g11070.1 68416.m01337 outer membrane OMP85 family protein con... 27 8.2
At1g63940.4 68414.m07242 monodehydroascorbate reductase, putativ... 27 8.2
At1g63940.3 68414.m07239 monodehydroascorbate reductase, putativ... 27 8.2
At1g63940.2 68414.m07240 monodehydroascorbate reductase, putativ... 27 8.2
At1g63940.1 68414.m07241 monodehydroascorbate reductase, putativ... 27 8.2
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 250 bits (611), Expect = 8e-67
Identities = 118/172 (68%), Positives = 142/172 (82%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGA 184
LAY+LPA+VH+ QPRL +DDGPIVL+LAPTRELA QIQ+ + +FG VR+TCI+GGA
Sbjct: 217 LAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGA 276
Query: 185 PKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKI 364
PKGPQ R L RGVEIVIATPGR +D LE + TNL+R TYLVLDEADRMLDMGFEPQIRKI
Sbjct: 277 PKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKI 336
Query: 365 IEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGSLELSANHNISRLL 520
+ QIRPDRQ L+WSATWPREV+ LA +FL D + IGS +L AN +I++++
Sbjct: 337 VSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVI 388
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 250 bits (611), Expect = 8e-67
Identities = 118/172 (68%), Positives = 142/172 (82%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGA 184
LAY+LPA+VH+ QPRL +DDGPIVL+LAPTRELA QIQ+ + +FG VR+TCI+GGA
Sbjct: 217 LAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGA 276
Query: 185 PKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKI 364
PKGPQ R L RGVEIVIATPGR +D LE + TNL+R TYLVLDEADRMLDMGFEPQIRKI
Sbjct: 277 PKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKI 336
Query: 365 IEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGSLELSANHNISRLL 520
+ QIRPDRQ L+WSATWPREV+ LA +FL D + IGS +L AN +I++++
Sbjct: 337 VSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVI 388
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 240 bits (587), Expect = 7e-64
Identities = 111/172 (64%), Positives = 138/172 (80%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGA 184
L+Y+LPAIVH+ QP L DGPIVLVLAPTRELA QIQQ A++FG S ++ TCI+GG
Sbjct: 151 LSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGV 210
Query: 185 PKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKI 364
PKGPQ R L++GVEIVIATPGR +D +E TNLRR TYLVLDEADRMLDMGF+PQIRKI
Sbjct: 211 PKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKI 270
Query: 365 IEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGSLELSANHNISRLL 520
+ IRPDRQ L WSATWP+EV+ L+++FL++ ++ IGS +L AN I +++
Sbjct: 271 VSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIV 322
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 188 bits (459), Expect = 2e-48
Identities = 94/173 (54%), Positives = 128/173 (73%), Gaps = 3/173 (1%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDD--GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFG 178
L Y++P +H+ R+ D GP +LVL+PTRELA QIQ+ A +FG+S + TC++G
Sbjct: 210 LGYLIPGFLHL---QRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYG 266
Query: 179 GAPKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIR 358
GAPKGPQ R LERG +IV+ATPGR D LE +LR+ +YLVLDEADRMLDMGFEPQIR
Sbjct: 267 GAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIR 326
Query: 359 KIIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGSL-ELSANHNISR 514
KI+++I RQ LM++ATWP+ V+ +A + L + Q+NIG++ EL AN +I++
Sbjct: 327 KIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQ 379
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 188 bits (459), Expect = 2e-48
Identities = 94/173 (54%), Positives = 128/173 (73%), Gaps = 3/173 (1%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDD--GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFG 178
L Y++P +H+ R+ D GP +LVL+PTRELA QIQ+ A +FG+S + TC++G
Sbjct: 210 LGYLIPGFLHL---QRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYG 266
Query: 179 GAPKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIR 358
GAPKGPQ R LERG +IV+ATPGR D LE +LR+ +YLVLDEADRMLDMGFEPQIR
Sbjct: 267 GAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIR 326
Query: 359 KIIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGSL-ELSANHNISR 514
KI+++I RQ LM++ATWP+ V+ +A + L + Q+NIG++ EL AN +I++
Sbjct: 327 KIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQ 379
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 188 bits (459), Expect = 2e-48
Identities = 94/173 (54%), Positives = 128/173 (73%), Gaps = 3/173 (1%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDD--GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFG 178
L Y++P +H+ R+ D GP +LVL+PTRELA QIQ+ A +FG+S + TC++G
Sbjct: 210 LGYLIPGFLHL---QRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYG 266
Query: 179 GAPKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIR 358
GAPKGPQ R LERG +IV+ATPGR D LE +LR+ +YLVLDEADRMLDMGFEPQIR
Sbjct: 267 GAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIR 326
Query: 359 KIIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGSL-ELSANHNISR 514
KI+++I RQ LM++ATWP+ V+ +A + L + Q+NIG++ EL AN +I++
Sbjct: 327 KIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQ 379
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 187 bits (456), Expect = 5e-48
Identities = 92/171 (53%), Positives = 126/171 (73%), Gaps = 1/171 (0%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGA 184
L Y++PA + ++ R +GP VL+LAPTRELA QIQ A FG+S + TC++GGA
Sbjct: 487 LGYLIPAFI-LLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGA 545
Query: 185 PKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKI 364
PKGPQ + LERG +IV+ATPGR D LE + + ++ + LVLDEADRMLDMGFEPQIRKI
Sbjct: 546 PKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKI 605
Query: 365 IEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGSL-ELSANHNISR 514
+ +I P RQ LM++ATWP+EV+ +A + L + +Q+NIG + EL+AN I++
Sbjct: 606 VNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQ 656
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 184 bits (448), Expect = 5e-47
Identities = 91/175 (52%), Positives = 128/175 (73%), Gaps = 3/175 (1%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDD--GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFG 178
L Y++P +H+ R+ D GP +LVL+PTRELA QIQ A +FG+S + C++G
Sbjct: 281 LGYLIPGFMHL---QRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYG 337
Query: 179 GAPKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIR 358
GAPKGPQ + +ERGV+IV+ATPGR D LE + +L + +YLVLDEADRMLDMGFEPQIR
Sbjct: 338 GAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIR 397
Query: 359 KIIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGSL-ELSANHNISRLL 520
KI+ ++ RQ LM++ATWP+EV+ +A + L + Q+NIG++ EL AN +I++ +
Sbjct: 398 KIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTI 452
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 179 bits (436), Expect = 1e-45
Identities = 85/171 (49%), Positives = 124/171 (72%)
Frame = +2
Query: 8 AYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAP 187
A++LP IVHI++QP L RD+GPI ++ APTRELA QI A +F ++ +R + ++GG
Sbjct: 281 AFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMS 340
Query: 188 KGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKII 367
K Q + L+ G EIV+ATPGR +D L+ + + R +YLVLDEADRM D+GFEPQ+R I+
Sbjct: 341 KHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIV 400
Query: 368 EQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGSLELSANHNISRLL 520
QIRPDRQ L++SAT P +V+ LA E L D I++ +G + + AN +I++++
Sbjct: 401 GQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGM-ANEDITQVV 450
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 164 bits (399), Expect = 4e-41
Identities = 82/175 (46%), Positives = 120/175 (68%), Gaps = 3/175 (1%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGA 184
L ++LP + HI +QP + DGPI LV+APTREL QQI +F +++ + ++GG+
Sbjct: 448 LGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGS 507
Query: 185 PKGPQGRCLERGVEIVIATPGRTLDFL---EKETTNLRRCTYLVLDEADRMLDMGFEPQI 355
Q L+RG EIV+ TPGR +D L + TNLRR TYLV+DEADRM DMGFEPQI
Sbjct: 508 GVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQI 567
Query: 356 RKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGSLELSANHNISRLL 520
+I++ IRPDRQ +++SAT+PR+V+ LA + L+ ++I +G + N +I++L+
Sbjct: 568 TRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSV-VNKDITQLV 621
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 164 bits (399), Expect = 4e-41
Identities = 82/175 (46%), Positives = 120/175 (68%), Gaps = 3/175 (1%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGA 184
L ++LP + HI +QP + DGPI LV+APTREL QQI +F + + +R ++GG+
Sbjct: 581 LGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGS 640
Query: 185 PKGPQGRCLERGVEIVIATPGRTLDFL---EKETTNLRRCTYLVLDEADRMLDMGFEPQI 355
Q L+RG EIV+ TPGR +D L + TNLRR T+LV+DEADRM DMGFEPQI
Sbjct: 641 GVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQI 700
Query: 356 RKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGSLELSANHNISRLL 520
+II+ IRP+RQ +++SAT+PR+V+ LA + L+ ++I +G + N +I++L+
Sbjct: 701 TRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSV-VNKDITQLV 754
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 159 bits (385), Expect = 2e-39
Identities = 77/177 (43%), Positives = 119/177 (67%), Gaps = 5/177 (2%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLL----RDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCI 172
LA+ +PAI+H++ + + + + P LVL+PTRELA QI V E G+ +++ C+
Sbjct: 166 LAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICV 225
Query: 173 FGGAPKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQ 352
+GG+ KGPQ + GV+IVI TPGR D +E L +++VLDEADRMLDMGFE
Sbjct: 226 YGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEP 285
Query: 353 IRKIIEQIRPDRQVLMWSATWPREVQNLAEEFLH-DYIQINIGSLELSANHNISRLL 520
+R I+ RQ++M+SATWP +V LA+EF+ + I++ IGS++L+ANH++ +++
Sbjct: 286 VRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQII 342
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 149 bits (360), Expect = 2e-36
Identities = 77/164 (46%), Positives = 108/164 (65%), Gaps = 4/164 (2%)
Frame = +2
Query: 38 INQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLER 217
+ +PR R P+ ++L+PTRELA QI A +F V+ +GG P Q R LER
Sbjct: 227 VQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELER 286
Query: 218 GVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI----RPD 385
GV+I++ATPGR D LE+ +++ +L LDEADRMLDMGFEPQIRKI+EQ+ R
Sbjct: 287 GVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGV 346
Query: 386 RQVLMWSATWPREVQNLAEEFLHDYIQINIGSLELSANHNISRL 517
RQ L++SAT+PRE+Q LA +FL +YI + +G + S + + R+
Sbjct: 347 RQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRV 390
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 147 bits (356), Expect = 6e-36
Identities = 77/164 (46%), Positives = 109/164 (66%), Gaps = 4/164 (2%)
Frame = +2
Query: 38 INQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLER 217
I +PR +R P+ ++L+PTRELA QI A +F V+ +GG P Q R LER
Sbjct: 214 IERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELER 273
Query: 218 GVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI-RPD--- 385
GV+I++ATPGR D LE+ +L+ +L LDEADRMLDMGFEPQIRKI++Q+ P
Sbjct: 274 GVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGV 333
Query: 386 RQVLMWSATWPREVQNLAEEFLHDYIQINIGSLELSANHNISRL 517
RQ +++SAT+PRE+Q LA +FL +YI + +G + S + + R+
Sbjct: 334 RQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRV 377
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 138 bits (333), Expect = 4e-33
Identities = 73/173 (42%), Positives = 107/173 (61%), Gaps = 4/173 (2%)
Frame = +2
Query: 38 INQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLER 217
+ +PR R P ++L+PTRELA QI A +F V+ +GG P Q R LER
Sbjct: 219 VERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELER 278
Query: 218 GVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI----RPD 385
G +I++ATPGR D LE+ +++ +L LDEADRMLDMGFEPQIRKI+EQ+ R
Sbjct: 279 GCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGV 338
Query: 386 RQVLMWSATWPREVQNLAEEFLHDYIQINIGSLELSANHNISRLLMFXRNGRR 544
RQ +++SAT+P ++Q LA +F+ +YI + +G + S + R+ + +R
Sbjct: 339 RQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKR 391
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 138 bits (333), Expect = 4e-33
Identities = 73/173 (42%), Positives = 107/173 (61%), Gaps = 4/173 (2%)
Frame = +2
Query: 38 INQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLER 217
+ +PR R P ++L+PTRELA QI A +F V+ +GG P Q R LER
Sbjct: 219 VERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELER 278
Query: 218 GVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI----RPD 385
G +I++ATPGR D LE+ +++ +L LDEADRMLDMGFEPQIRKI+EQ+ R
Sbjct: 279 GCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGV 338
Query: 386 RQVLMWSATWPREVQNLAEEFLHDYIQINIGSLELSANHNISRLLMFXRNGRR 544
RQ +++SAT+P ++Q LA +F+ +YI + +G + S + R+ + +R
Sbjct: 339 RQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKR 391
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 124 bits (299), Expect = 5e-29
Identities = 70/178 (39%), Positives = 105/178 (58%), Gaps = 20/178 (11%)
Frame = +2
Query: 8 AYILPAIVHIINQPRLLRD---DGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFG 178
A++LP + +I P + + +GP +V+APTRELAQQI++ +F + R T I G
Sbjct: 366 AFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVG 425
Query: 179 GAPKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIR 358
G QG + +G EIVIATPGR +D LE+ L +C Y+VLDEADRM+DMGFEPQ+
Sbjct: 426 GQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVA 485
Query: 359 KIIE-----QIRPD------------RQVLMWSATWPREVQNLAEEFLHDYIQINIGS 481
+++ ++P+ R M+SAT P V+ LA ++L + + + IG+
Sbjct: 486 GVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGT 543
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 119 bits (287), Expect = 1e-27
Identities = 65/196 (33%), Positives = 111/196 (56%), Gaps = 9/196 (4%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLL---RDDGPIVLVLAPTRELAQQIQQVANEFGQSI------HV 157
L ++LP I+ + + ++ +GPI L++ P+RELA+Q +V +F + +
Sbjct: 198 LVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPL 257
Query: 158 RNTCIFGGAPKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDM 337
R+ GG Q ++RGV IV+ATPGR D L K+ +L C YL LDEADR++D+
Sbjct: 258 RSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDL 317
Query: 338 GFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGSLELSANHNISRL 517
GFE IR++ + + RQ L++SAT P ++Q A L + +N+G +AN ++ +
Sbjct: 318 GFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAG-AANLDVIQE 376
Query: 518 LMFXRNGRRMIN*LHC 565
+ + + +++ L C
Sbjct: 377 VEYVKQEAKIVYLLEC 392
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 118 bits (283), Expect = 5e-27
Identities = 59/158 (37%), Positives = 100/158 (63%), Gaps = 1/158 (0%)
Frame = +2
Query: 5 LAYILPAIVHIIN-QPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGG 181
LA+ +P I II + R P+ LVLAPTRELA+Q+++ E S+ C++GG
Sbjct: 156 LAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDT--ICLYGG 213
Query: 182 APKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRK 361
P G Q R L+ GV++ + TPGR +D +++ NL ++VLDEAD+ML +GF +
Sbjct: 214 TPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEI 273
Query: 362 IIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINI 475
I+E++ RQ +M+SAT P +++L +++L++ + +++
Sbjct: 274 ILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDL 311
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 117 bits (282), Expect = 6e-27
Identities = 65/196 (33%), Positives = 109/196 (55%), Gaps = 9/196 (4%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLL---RDDGPIVLVLAPTRELAQQIQQVANEFGQSI------HV 157
L ++LP I+ + + ++ +GPI LV+ P+RELA+Q V +F S+ +
Sbjct: 149 LVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRL 208
Query: 158 RNTCIFGGAPKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDM 337
R+ GG Q +++GV IV+ATPGR D L K+ +L C L LDEADR++D+
Sbjct: 209 RSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDL 268
Query: 338 GFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGSLELSANHNISRL 517
GFE IR + + + RQ L++SAT P ++Q A L + +N+G +AN ++ +
Sbjct: 269 GFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAG-AANLDVIQE 327
Query: 518 LMFXRNGRRMIN*LHC 565
+ + + +++ L C
Sbjct: 328 VEYVKQEAKIVYLLEC 343
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 113 bits (272), Expect = 1e-25
Identities = 58/158 (36%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Frame = +2
Query: 5 LAYILPAIVHIIN-QPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGG 181
LA+ +P I II + R P LVLAPTRELA+Q+++ E S+ C++GG
Sbjct: 168 LAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDT--ICLYGG 225
Query: 182 APKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRK 361
P G Q R L G+++ + TPGR +D +++ NL ++VLDEAD+ML +GF +
Sbjct: 226 TPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEI 285
Query: 362 IIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINI 475
I++++ RQ +M+SAT P +++L +++L++ + I++
Sbjct: 286 ILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDL 323
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 111 bits (267), Expect = 4e-25
Identities = 55/135 (40%), Positives = 85/135 (62%)
Frame = +2
Query: 71 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 250
P LVLAPTRELA+Q+++ E + ++ C++GG Q L RGV++V+ TPGR
Sbjct: 181 PKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGR 238
Query: 251 TLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQ 430
+D +E + L YLVLDEAD+ML +GFE + I+E + RQ +++SAT P V+
Sbjct: 239 IIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVK 298
Query: 431 NLAEEFLHDYIQINI 475
LA ++L + + I++
Sbjct: 299 KLARKYLDNPLNIDL 313
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 107 bits (257), Expect = 6e-24
Identities = 64/180 (35%), Positives = 106/180 (58%), Gaps = 9/180 (5%)
Frame = +2
Query: 5 LAYILPAIVHIINQP-RLLRDDG----PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTC 169
LA++LP + ++N P + R G P VLVL PTRELA+Q+ + +G S+ + + C
Sbjct: 148 LAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCC 207
Query: 170 IFGGAPKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEP 349
++GG Q L+RGV+IV+ TPGR D +E++ + + VLDEAD ML MGF
Sbjct: 208 LYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVE 267
Query: 350 QIRKIIEQIRPDR--QVLMWSATWPREVQNLAEEFL-HDYIQIN-IGSLELSANHNISRL 517
+ I+ ++ Q L++SAT P V+N++ FL D I+ +G+ ++ A++++ +
Sbjct: 268 DVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHI 327
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 102 bits (244), Expect = 2e-22
Identities = 52/137 (37%), Positives = 78/137 (56%)
Frame = +2
Query: 71 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 250
P+ +VLAPTREL Q++ A G+ + + + GG P Q +++GVE++I TPGR
Sbjct: 187 PLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGR 246
Query: 251 TLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQ 430
+D L K T L VLDE D ML GF Q+ +I + + QVL++SAT REV+
Sbjct: 247 VVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATISREVE 305
Query: 431 NLAEEFLHDYIQINIGS 481
+ + I ++IG+
Sbjct: 306 KVGGSLAKEIILVSIGN 322
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 102 bits (244), Expect = 2e-22
Identities = 52/137 (37%), Positives = 78/137 (56%)
Frame = +2
Query: 71 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 250
P+ +VLAPTREL Q++ A G+ + + + GG P Q +++GVE++I TPGR
Sbjct: 50 PLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGR 109
Query: 251 TLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQ 430
+D L K T L VLDE D ML GF Q+ +I + + QVL++SAT REV+
Sbjct: 110 VVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATISREVE 168
Query: 431 NLAEEFLHDYIQINIGS 481
+ + I ++IG+
Sbjct: 169 KVGGSLAKEIILVSIGN 185
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 100 bits (239), Expect = 1e-21
Identities = 54/138 (39%), Positives = 77/138 (55%)
Frame = +2
Query: 80 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRTLD 259
LVLAPTRELAQQI++V G + V+ GG R L+ GV +V+ TPGR D
Sbjct: 111 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 170
Query: 260 FLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLA 439
L++++ VLDEAD ML GF+ QI I + + P QV ++SAT P E +
Sbjct: 171 MLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 230
Query: 440 EEFLHDYIQINIGSLELS 493
+F+ ++I + EL+
Sbjct: 231 RKFMSKPVRILVKRDELT 248
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 97.9 bits (233), Expect = 5e-21
Identities = 53/138 (38%), Positives = 76/138 (55%)
Frame = +2
Query: 80 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRTLD 259
LVLAPTRELAQQI++V G + V+ GG R L+ GV +V+ TPGR D
Sbjct: 113 LVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFD 172
Query: 260 FLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLA 439
L +++ VLDEAD ML GF+ QI I + + QV ++SAT P E +
Sbjct: 173 LLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEIT 232
Query: 440 EEFLHDYIQINIGSLELS 493
+F++ ++I + EL+
Sbjct: 233 RKFMNKPVRILVKRDELT 250
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 97.5 bits (232), Expect = 7e-21
Identities = 49/138 (35%), Positives = 76/138 (55%)
Frame = +2
Query: 80 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRTLD 259
L+L+PTRELA Q ++ G +++ GG G R LE GV +V TPGR D
Sbjct: 107 LILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCD 166
Query: 260 FLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLA 439
+++ + R L+LDE+D ML GF+ QI + + PD QV + SAT P E+ +
Sbjct: 167 MIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMT 226
Query: 440 EEFLHDYIQINIGSLELS 493
+F+ + ++I + EL+
Sbjct: 227 SKFMTEPVKILVKRDELT 244
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 95.9 bits (228), Expect = 2e-20
Identities = 54/138 (39%), Positives = 75/138 (54%)
Frame = +2
Query: 80 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRTLD 259
LVLAPTRELAQQI++V G V+ GG R L+ GV +V+ TPGR D
Sbjct: 111 LVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 170
Query: 260 FLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLA 439
L +++ VLDEAD ML GF+ QI I + + P QV ++SAT P E +
Sbjct: 171 MLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 230
Query: 440 EEFLHDYIQINIGSLELS 493
+F+ ++I + EL+
Sbjct: 231 RKFMSKPVRILVKRDELT 248
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 95.1 bits (226), Expect = 4e-20
Identities = 58/166 (34%), Positives = 94/166 (56%), Gaps = 3/166 (1%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGA 184
LA+++PA V ++ + + +G VLV+ PTRELA Q VA E + + GG
Sbjct: 206 LAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGE 264
Query: 185 PKGPQGRCLERGVEIVIATPGRTLDFLEKETTNL-RRCTYLVLDEADRMLDMGFEPQIRK 361
+ + L +GV +++ATPGR LD LE + + +LV+DEADR+L+ FE ++K
Sbjct: 265 KRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKK 324
Query: 362 IIEQIRPDRQVLMWSATWPREVQNLAEEFLHD--YIQINIGSLELS 493
I+ + RQ ++SAT +V++LA L YI ++ G E++
Sbjct: 325 ILNLLPKTRQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVT 370
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 95.1 bits (226), Expect = 4e-20
Identities = 47/132 (35%), Positives = 76/132 (57%)
Frame = +2
Query: 80 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRTLD 259
+++ PTRELA Q QV E G+ + ++ GG L + V +++ TPGR LD
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILD 262
Query: 260 FLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLA 439
+K L+ C+ LV+DEAD++L F+P + +I + RQ+LM+SAT+P V++
Sbjct: 263 LTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFK 322
Query: 440 EEFLHDYIQINI 475
+ FL + IN+
Sbjct: 323 DRFLTNPYVINL 334
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 95.1 bits (226), Expect = 4e-20
Identities = 47/132 (35%), Positives = 76/132 (57%)
Frame = +2
Query: 80 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRTLD 259
+++ PTRELA Q QV E G+ + ++ GG L + V +++ TPGR LD
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILD 262
Query: 260 FLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLA 439
+K L+ C+ LV+DEAD++L F+P + +I + RQ+LM+SAT+P V++
Sbjct: 263 LTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFK 322
Query: 440 EEFLHDYIQINI 475
+ FL + IN+
Sbjct: 323 DRFLTNPYVINL 334
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 93.9 bits (223), Expect = 8e-20
Identities = 50/139 (35%), Positives = 77/139 (55%)
Frame = +2
Query: 77 VLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRTL 256
VLVL+P+RELA Q ++ G +++ GG G + LERGV V TPGR
Sbjct: 93 VLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVY 152
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNL 436
D +++ + + LVLDE+D ML G + QI + + D QV + SAT P+E+ +
Sbjct: 153 DMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEM 212
Query: 437 AEEFLHDYIQINIGSLELS 493
E+F+ D ++I + EL+
Sbjct: 213 TEKFMTDPVRILVKPDELT 231
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 92.7 bits (220), Expect = 2e-19
Identities = 47/132 (35%), Positives = 75/132 (56%)
Frame = +2
Query: 80 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRTLD 259
++L PTRELA Q QV E + + + GG L + V +++ TPGR LD
Sbjct: 226 VILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILD 285
Query: 260 FLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLA 439
+K L+ C LV+DEAD++L + F+P I ++I+ + RQ+LM+SAT+P V++
Sbjct: 286 LAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFK 345
Query: 440 EEFLHDYIQINI 475
+ +L IN+
Sbjct: 346 DRYLKKPYIINL 357
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 92.3 bits (219), Expect = 3e-19
Identities = 64/166 (38%), Positives = 90/166 (54%), Gaps = 13/166 (7%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGP---IVLVLAPTRELAQQIQQVAN---EFGQSIHVRNT 166
+A++LPAI +I P RD IVLV+ PTRELA Q AN ++ SI V+
Sbjct: 434 VAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQ-- 491
Query: 167 CIFGGAPKGPQGRCLERG-VEIVIATPGRTLDFLEKET---TNLRRCTYLVLDEADRMLD 334
+ GG + R ++ +I++ATPGR D +E + T L LVLDEAD +LD
Sbjct: 492 VVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLD 551
Query: 335 MGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFL---HDYI 463
MGF I +II + RQ ++SAT P EV+ + L H++I
Sbjct: 552 MGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQICHVALKRDHEFI 597
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 91.1 bits (216), Expect = 6e-19
Identities = 48/131 (36%), Positives = 75/131 (57%), Gaps = 1/131 (0%)
Frame = +2
Query: 68 GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPG 247
G L+L+PTR+LA+Q + E G+ +R + + GG Q L +G +++IATPG
Sbjct: 98 GVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPG 157
Query: 248 RTLDFL-EKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPRE 424
R + L E + LR Y+V DEAD + MGF Q+ +I+ Q+ +RQ L++SAT P
Sbjct: 158 RLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPSA 217
Query: 425 VQNLAEEFLHD 457
+ A+ L +
Sbjct: 218 LAEFAKAGLRE 228
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 90.6 bits (215), Expect = 8e-19
Identities = 64/175 (36%), Positives = 97/175 (55%), Gaps = 14/175 (8%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDG--PIV-LVLAPTRELAQQIQQVAN---EFGQSIHVRNT 166
+A++LP+I ++ P D+ PI+ LV+ PTRELA Q AN ++ SI V+
Sbjct: 106 VAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQ-- 163
Query: 167 CIFGGAPKG-PQGRCLERGVEIVIATPGRTLDFLEKE---TTNLRRCTYLVLDEADRMLD 334
+ GG G Q R +I++ATPGR D +E T L+ LVLDEAD +LD
Sbjct: 164 VVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLD 223
Query: 335 MGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFL---HDYIQ-INIGSLE 487
MGF I +II + +RQ ++SAT P EV+ + L H+++ ++ G++E
Sbjct: 224 MGFRKDIERIISAVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIE 278
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 90.6 bits (215), Expect = 8e-19
Identities = 66/176 (37%), Positives = 98/176 (55%), Gaps = 14/176 (7%)
Frame = +2
Query: 2 ALAYILPAIVHII---NQPRLLRDDGPI-VLVLAPTRELAQQIQQVAN---EFGQSIHVR 160
++A++LPAI ++ N + + PI L+L PTRELA QI +F I V+
Sbjct: 379 SMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQ 438
Query: 161 NTCIFGGAPKGPQGRCLERGVEIVIATPGRTLDFLEKE---TTNLRRCTYLVLDEADRML 331
T I G K Q R +I+IATPGR LD +E + T+ L ++DEAD +L
Sbjct: 439 -TLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLL 497
Query: 332 DMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFL---HDYIQ-INIGSLE 487
D+GF + KII+ + RQ L++SAT P+EV+ +++ L H YI I +G +E
Sbjct: 498 DLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVE 553
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 90.2 bits (214), Expect = 1e-18
Identities = 46/132 (34%), Positives = 74/132 (56%)
Frame = +2
Query: 80 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRTLD 259
++L PTRELA Q QV E + ++++ GG L + V +++ TPGR LD
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILD 255
Query: 260 FLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLA 439
+K L+ C LV+DEAD++L F+P + ++I+ + +RQ LM+SAT+P V+
Sbjct: 256 LTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFK 315
Query: 440 EEFLHDYIQINI 475
+ L IN+
Sbjct: 316 DRHLRKPYVINL 327
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 90.2 bits (214), Expect = 1e-18
Identities = 46/132 (34%), Positives = 74/132 (56%)
Frame = +2
Query: 80 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRTLD 259
++L PTRELA Q QV E + ++++ GG L + V +++ TPGR LD
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILD 255
Query: 260 FLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLA 439
+K L+ C LV+DEAD++L F+P + ++I+ + +RQ LM+SAT+P V+
Sbjct: 256 LTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFK 315
Query: 440 EEFLHDYIQINI 475
+ L IN+
Sbjct: 316 DRHLRKPYVINL 327
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 89.8 bits (213), Expect = 1e-18
Identities = 53/158 (33%), Positives = 90/158 (56%), Gaps = 1/158 (0%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGA 184
LA+++PA V ++ + R +G V+V+ PTRELA Q + VA E + + + GG
Sbjct: 141 LAFLIPA-VELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGN 199
Query: 185 PKGPQGRCLERGVEIVIATPGRTLDFLEKETTNL-RRCTYLVLDEADRMLDMGFEPQIRK 361
+ + + + G +VIATPGR LD L+ + + LV+DEADR+L+ FE + K
Sbjct: 200 NRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNK 259
Query: 362 IIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINI 475
I++ + RQ ++SAT +V++LA L + +++
Sbjct: 260 ILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVDV 297
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 89.0 bits (211), Expect = 2e-18
Identities = 54/161 (33%), Positives = 90/161 (55%), Gaps = 5/161 (3%)
Frame = +2
Query: 14 ILPAIVHII--NQPRLLRDDGP--IVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGG 181
IL A++ + ++P+ R P VL+PTRELA QI + G I +R + GG
Sbjct: 67 ILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGG 126
Query: 182 APKGPQGRCLERGVEIVIATPGRTLDFL-EKETTNLRRCTYLVLDEADRMLDMGFEPQIR 358
+ Q L + +++ATPGR D + + + +L+ YLVLDEADR+L+ FE +
Sbjct: 127 IDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLN 186
Query: 359 KIIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGS 481
+I+E+I +R+ ++SAT ++V+ L L + ++I S
Sbjct: 187 QILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAAS 227
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 88.2 bits (209), Expect = 4e-18
Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 14/176 (7%)
Frame = +2
Query: 2 ALAYILPAIVHII---NQPRLLRDDGPI-VLVLAPTRELAQQIQQVANEFGQS---IHVR 160
++A++LPAI ++ N + + PI VL+L PTRELA QI ++ I V+
Sbjct: 426 SMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQ 485
Query: 161 NTCIFGGAPKGPQGRCLERGVEIVIATPGRTLDFLEKE---TTNLRRCTYLVLDEADRML 331
T I G + Q R +I+IATPGR LD +E + T+ L ++DEAD +L
Sbjct: 486 -TLIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLL 544
Query: 332 DMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFL---HDYIQ-INIGSLE 487
D+GF+ + KII+ + RQ L++SAT P+EV+ +++ L H YI I +G +E
Sbjct: 545 DLGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVE 600
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 87.0 bits (206), Expect = 1e-17
Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 5/164 (3%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGPIVL--VLAPTRELAQQIQQVANEFGQSI-HVRNTCIF 175
LA++LP + II + V+ +++PTREL+ QI +VA F ++ +V + +
Sbjct: 68 LAFLLP-FIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLV 126
Query: 176 GGAPKGPQGRCLER-GVEIVIATPGRTLDFLEK-ETTNLRRCTYLVLDEADRMLDMGFEP 349
GG LE G ++I TPGR D +++ E + R L+LDEADR+LDMGF+
Sbjct: 127 GGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQK 186
Query: 350 QIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGS 481
Q+ II ++ R+ ++SAT + V +LA+ L + +++ G+
Sbjct: 187 QVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGA 230
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 86.6 bits (205), Expect = 1e-17
Identities = 61/166 (36%), Positives = 92/166 (55%), Gaps = 13/166 (7%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGP---IVLVLAPTRELAQQIQQVAN---EFGQSIHVRNT 166
+A++LP+I +I P RD+ IVLV+ PTRELA Q AN ++ SI V+
Sbjct: 132 VAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQ-- 189
Query: 167 CIFGGAPKGPQGRCLERG-VEIVIATPGRTLDFLEKET---TNLRRCTYLVLDEADRMLD 334
+ GG + R L++ +I++ATPGR D ++ + T L LVLDEAD +LD
Sbjct: 190 VVIGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLD 249
Query: 335 MGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFL---HDYI 463
MGF +I +II + RQ ++SAT EV+ + L H+++
Sbjct: 250 MGFRREIERIIAAVPKQRQTFLFSATVSDEVRQICHVALKRDHEFV 295
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 86.6 bits (205), Expect = 1e-17
Identities = 56/160 (35%), Positives = 83/160 (51%), Gaps = 13/160 (8%)
Frame = +2
Query: 5 LAYILPAIVHII-----NQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTC 169
LAY+LP IV ++ N + + P +VL PTREL++Q+ +VA R+
Sbjct: 164 LAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSIL 222
Query: 170 IFGGAPKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEP 349
+ GG+ PQ L +++V+ TPGR L +E+ YLVLDEAD M D GF P
Sbjct: 223 VSGGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGP 282
Query: 350 QIRKIIEQIRP------DR--QVLMWSATWPREVQNLAEE 445
+IRK + + D+ Q ++ +AT VQ L +E
Sbjct: 283 EIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDE 322
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 86.2 bits (204), Expect = 2e-17
Identities = 52/162 (32%), Positives = 92/162 (56%), Gaps = 5/162 (3%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGPIVL--VLAPTRELAQQIQQVANEFGQSI-HVRNTCIF 175
LA+++P +V I+ + V+ +++PTREL+ QI VA F ++ +V + +
Sbjct: 68 LAFVVP-LVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLV 126
Query: 176 GGAPKGPQGRCLER-GVEIVIATPGRTLDFLEK-ETTNLRRCTYLVLDEADRMLDMGFEP 349
GG + +E G ++I TPGR D +E+ E + R L+LDEADR+L+MGF+
Sbjct: 127 GGREVKADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQR 186
Query: 350 QIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINI 475
Q+ II ++ R+ ++SAT V+ LA+ L + +++ +
Sbjct: 187 QVNYIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVEV 228
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 86.2 bits (204), Expect = 2e-17
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 1/156 (0%)
Frame = +2
Query: 8 AYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAP 187
A+ LP + ++ +P+ R VL+L PTRELA QI + Q ++ I GG
Sbjct: 220 AFALPTLERLLFRPK--RVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLS 277
Query: 188 KGPQGRCLERGVEIVIATPGRTLDFLEKE-TTNLRRCTYLVLDEADRMLDMGFEPQIRKI 364
Q L +IV+ATPGR +D L + +L L+LDEADR+L GF +I ++
Sbjct: 278 VREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITEL 337
Query: 365 IEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQIN 472
+ RQ +++SAT EV+ L + L+ ++++
Sbjct: 338 VRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLS 373
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 83.0 bits (196), Expect = 2e-16
Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 4/160 (2%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGA 184
LA+++P I+ +++ R +DG ++++PTRELA Q V N+ G+ + GG
Sbjct: 123 LAFVIP-ILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGR 181
Query: 185 PKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLR--RCTYLVLDEADRMLDMGFEPQIR 358
+ + I++ PGR L ++ ET N + L+LDEADR+LD F+ Q+
Sbjct: 182 EGVDVEKERVHEMNILVCAPGRLLQHMD-ETPNFECPQLQILILDEADRVLDSAFKGQLD 240
Query: 359 KIIEQIRPDRQVLMWSATWPREVQNLAEEFLHD--YIQIN 472
II Q+ RQ L++SAT ++V++LA L D YI ++
Sbjct: 241 PIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVH 280
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 83.0 bits (196), Expect = 2e-16
Identities = 53/135 (39%), Positives = 71/135 (52%), Gaps = 4/135 (2%)
Frame = +2
Query: 50 RLLRDD-GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVE 226
RL D G LV+ PTRELA Q+ + G +++R + I GG Q L
Sbjct: 119 RLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPH 178
Query: 227 IVIATPGRTLDFLEKETTN---LRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVL 397
IVI TPGR LE R +LVLDEADR+LD+GF+ ++R I + + RQ L
Sbjct: 179 IVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTL 238
Query: 398 MWSATWPREVQNLAE 442
++SAT +Q L E
Sbjct: 239 LFSATMTSNLQALLE 253
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 82.2 bits (194), Expect = 3e-16
Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 19/187 (10%)
Frame = +2
Query: 5 LAYILPAIVHII-NQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIH-VRNTCIFG 178
+AY+ P I H+ + P++ R G LV+ PTREL Q+ + + H + + G
Sbjct: 82 IAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMG 141
Query: 179 GAPKGPQGRCLERGVEIVIATPGRTLDFLEKETTNL-RRCTYLVLDEADRMLDMGFEPQI 355
G K + L +G+ I+IATPGR LD L+ + + + +++ DEAD +L++G+ +I
Sbjct: 142 GEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEI 201
Query: 356 RKII--------EQIRPD--------RQVLMWSATWPREVQNLAEEFLHDYIQINIGSLE 487
+II EQ D +Q L+ SAT +V +LA+ L D + I + + +
Sbjct: 202 EQIIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTK 261
Query: 488 LSANHNI 508
L N +I
Sbjct: 262 LQQNLSI 268
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 72.5 bits (170), Expect = 2e-13
Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDDGPIVL--VLAPTRELAQQIQQVANEFGQSIHVRNTCIFG 178
LA++LP + II + V+ +++PTREL+ QI +VA VR
Sbjct: 69 LAFLLP-FIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARA------VRLDFAKC 121
Query: 179 GAPKGPQGRCLERGVEIVIATPGRTLDFLEK-ETTNLRRCTYLVLDEADRMLDMGFEPQI 355
+ E G ++I TPGR D +++ E + R L+LDEADR+LDMGF+ Q+
Sbjct: 122 REVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQV 181
Query: 356 RKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHD 457
II ++ R+ ++SAT + V +LA+ L +
Sbjct: 182 NYIISRLPKQRRTGLFSATQTQAVADLAKAGLRN 215
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 66.5 bits (155), Expect = 1e-11
Identities = 50/157 (31%), Positives = 73/157 (46%), Gaps = 6/157 (3%)
Frame = +2
Query: 5 LAYILPAIVHIIN---QPRLLRDDG-PIVLVLAPTRELAQQIQQVANEFGQS-IHVRNTC 169
LAY++P I + Q G P V+VL PT ELA Q+ +S + R+
Sbjct: 426 LAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMV 485
Query: 170 IFGGAPKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRML-DMGFE 346
+ GG + Q LE+GV+++IATPGR + + L +LDE D + D FE
Sbjct: 486 VTGGFRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFE 545
Query: 347 PQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHD 457
++ +I Q L +AT P E+ N E D
Sbjct: 546 AALQNLINSSPVTAQYLFVTATLPLEIYNKLVEVFPD 582
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 66.1 bits (154), Expect = 2e-11
Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 3/135 (2%)
Frame = +2
Query: 80 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGV--EIVIATPGRT 253
LVL TRELA QI F + +F G + L + IV+ TPGR
Sbjct: 118 LVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRV 177
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQVLMWSATWPREVQ 430
L ++ +L+ + +LDE D+ML+ + +++I + D+QV+M+SAT +E++
Sbjct: 178 LALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 237
Query: 431 NLAEEFLHDYIQINI 475
+ ++F+ D ++I +
Sbjct: 238 PVCKKFMQDPMEIYV 252
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 66.1 bits (154), Expect = 2e-11
Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 3/135 (2%)
Frame = +2
Query: 80 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGV--EIVIATPGRT 253
LVL TRELA QI F + +F G + L + IV+ TPGR
Sbjct: 35 LVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRV 94
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQVLMWSATWPREVQ 430
L ++ +L+ + +LDE D+ML+ + +++I + D+QV+M+SAT +E++
Sbjct: 95 LALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 154
Query: 431 NLAEEFLHDYIQINI 475
+ ++F+ D ++I +
Sbjct: 155 PVCKKFMQDPMEIYV 169
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 66.1 bits (154), Expect = 2e-11
Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 3/135 (2%)
Frame = +2
Query: 80 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGV--EIVIATPGRT 253
LVL TRELA QI F + +F G + L + IV+ TPGR
Sbjct: 118 LVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRV 177
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQVLMWSATWPREVQ 430
L ++ +L+ + +LDE D+ML+ + +++I + D+QV+M+SAT +E++
Sbjct: 178 LALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 237
Query: 431 NLAEEFLHDYIQINI 475
+ ++F+ D ++I +
Sbjct: 238 PVCKKFMQDPMEIYV 252
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 66.1 bits (154), Expect = 2e-11
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Frame = +2
Query: 80 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRTLD 259
L++ PTRELA Q+ + +++ V+ I GG Q R L+ EIV+ATPGR +
Sbjct: 283 LIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWE 342
Query: 260 FL---EKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIE 370
+ EK L ++ VLDEADRM++ G +++ I++
Sbjct: 343 LMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILD 382
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 61.7 bits (143), Expect = 4e-10
Identities = 46/176 (26%), Positives = 88/176 (50%), Gaps = 3/176 (1%)
Frame = +2
Query: 8 AYILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEF--GQSIHVRNTCIFGG 181
A+I P ++ + +P DG ++L+P RELA Q + + G + H+R
Sbjct: 194 AFICPMLIKL-KRPST---DGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMT---- 245
Query: 182 APKGPQGRCLERGVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRK 361
P + +++I+TP R ++ + +L + YLVLDE+D++ + QI
Sbjct: 246 KPLVKTADFSKLWCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDC 305
Query: 362 IIEQI-RPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGSLELSANHNISRLLMF 526
+++ P ++SAT P V+ LA +HD +++ IG + +A+ + + L+F
Sbjct: 306 VVKACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGR-KNTASETVKQKLVF 360
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 60.9 bits (141), Expect = 7e-10
Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
Frame = +2
Query: 80 LVLAPTRELAQQIQQVANEFGQSIHVRNTC-IFGGAPKGPQGRCLERGVE-IVIATPGRT 253
+++AP+REL QI + + +H R + GGA + Q L++ IV+ TPGR
Sbjct: 195 MIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRI 254
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI--------------RPDRQ 391
+ + + C +LVLDE D +L F I +I+E + R +RQ
Sbjct: 255 AEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDERANRQ 314
Query: 392 VLMWSATWPREVQNLAEEFLHDYIQI 469
++ SAT P V A+ + H+ + +
Sbjct: 315 TILVSATVPFSVIRAAKSWSHEPVLV 340
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 56.4 bits (130), Expect = 2e-08
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Frame = +2
Query: 71 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQG--RCLERGVEIVIATP 244
P L + PTRELA Q +V + G+ + + +G R +VI TP
Sbjct: 163 PQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTP 222
Query: 245 GRTLDFLEKETTNLRRCTYLVLDEADRMLDM-GFEP---QIRKIIEQIRPDRQVLMWSAT 412
G ++ + L LV DEAD ML GF +I K I ++ P+ QVL++SAT
Sbjct: 223 GTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSAT 282
Query: 413 WPREVQNLAEEFLHDYIQINIGSLELS 493
+ V++ + D Q+ + +L+
Sbjct: 283 FNETVKDFVARTVKDPNQLFVKREDLA 309
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 52.8 bits (121), Expect = 2e-07
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 7/164 (4%)
Frame = +2
Query: 5 LAYILPAIVHIINQPRLLRDD-GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCI-FG 178
LAY+LP + + + + + P +L P+REL QQ+ + + V+ +
Sbjct: 98 LAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLT 157
Query: 179 GAPKGPQGRCLERGV-EIVIATPGRTLDFLE----KETTNLRRCTYLVLDEADRMLDMGF 343
+ R G+ EI+++TP + T + LVLDEAD +L G+
Sbjct: 158 SSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGY 217
Query: 344 EPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINI 475
E +R + I Q L+ SAT +V+ L + LH+ I + +
Sbjct: 218 EDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTL 261
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 48.0 bits (109), Expect = 5e-06
Identities = 30/139 (21%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Frame = +2
Query: 38 INQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLER 217
+ + L + P +L L P++ A Q++ V + I + + GAP Q L+
Sbjct: 186 VEEEEELLGNSPFLLYLVPSQSKASQVRSVCKAL-KGIGIHTVSLHQGAPLDHQISGLKS 244
Query: 218 -GVEIVIATPGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV 394
E ++ATP R L+ + + ++ + LV+DE + G+ ++ I + I Q
Sbjct: 245 VEPEFIVATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQT 304
Query: 395 LMWSATWPREVQNLAEEFL 451
++++ ++ + + FL
Sbjct: 305 IVFNNSFSASIIPAVQSFL 323
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 47.6 bits (108), Expect = 7e-06
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 23/145 (15%)
Frame = +2
Query: 5 LAYILPAIVHIINQP-RLLRDDGPIVLVLAPTRELAQQIQQV----ANEFGQSIH--VRN 163
L+Y LP + + ++P R LR LV+ PTR+LA Q++ V A G S+ V
Sbjct: 77 LSYALPIVQLLASRPVRCLR-----ALVVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQ 131
Query: 164 TCIFGG------APKGPQGRC---------LERGVEIVIATPGRTLDFLEK-ETTNLRRC 295
+ I G PK G C LE V+I++ATPGR +D + + L
Sbjct: 132 SSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHL 191
Query: 296 TYLVLDEADRMLDMGFEPQIRKIIE 370
YLV+DE DR+L ++ + +++
Sbjct: 192 RYLVVDETDRLLREAYQSWLPTVLQ 216
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 42.3 bits (95), Expect = 3e-04
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Frame = +2
Query: 74 IVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRT 253
I L+L P L +Q+ ++ N G N + A G QG +R +I+++TP
Sbjct: 164 ISLILCPNVMLCEQVVRMVN--GLVDEDGNPLLRVEAVCGSQG-WPDRLPDIIVSTPAAL 220
Query: 254 LDFLE-KETTNLR--RCT-YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 391
L+ +E K L RC Y+V DEAD +L F+ QI ++I +R D +
Sbjct: 221 LNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINMLRFDEK 270
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 35.5 bits (78), Expect = 0.031
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 9/138 (6%)
Frame = +2
Query: 80 LVLAPTRELAQQIQQVANEFG--QSIHVRNTCIF----GGAPKGPQGRCLERGVEIVIAT 241
+++ PTREL Q+ +VA I V+ + GG + + I++AT
Sbjct: 148 VIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVAT 207
Query: 242 PGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFE-PQIRKIIEQIR--PDRQVLMWSAT 412
LEK + LV+DE D + + +RK++ RQ + SA+
Sbjct: 208 VASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASAS 267
Query: 413 WPREVQNLAEEFLHDYIQ 466
P+ + F+HD IQ
Sbjct: 268 IPQH-----KHFVHDCIQ 280
>At3g07040.1 68416.m00836 disease resistance protein RPM1
(CC-NBS-LRR class), putative domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
Identical to RPM1 (gi:1361985)
Length = 926
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 86 LAPTRELAQQIQQVANEFGQSIHVRNTC 169
+A TR+LA QI+ + +EFG IH +C
Sbjct: 68 VANTRDLAYQIEDILDEFGYHIHGYRSC 95
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 284 LRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVL 397
L++ LVLDEA +D + I+KII Q DR V+
Sbjct: 938 LKKSNILVLDEATASVDSATDGVIQKIINQEFKDRTVV 975
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 284 LRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVL 397
L++ LVLDEA +D + I+KII Q DR V+
Sbjct: 1391 LKKSNILVLDEATASVDSATDGVIQKIINQEFKDRTVV 1428
>At1g77680.1 68414.m09044 ribonuclease II family protein weak
similarity to SP|P37202 Mitotic control protein dis3
{Schizosaccharomyces pombe}; contains Pfam profile
PF00773: RNB-like protein
Length = 1055
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 197 QGRCLERGVEIVIATPGRTLDFLEKETTNLR 289
+G C + G+++ I++ G+ D LEK T NL+
Sbjct: 725 EGFCSKHGMDLDISSSGQLQDSLEKITGNLK 755
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/58 (31%), Positives = 21/58 (36%)
Frame = -2
Query: 347 ARSPCPTFYQPHPAPNKCIGAGSLSPSPKNXXXXXXXXXXFPLPSQDICPVVPLEHHQ 174
++SP P Y P P P K SP P P PS D + P HQ
Sbjct: 631 SQSP-PVVYSPPPRPPKINSPPVQSPPPAPVEKKETPPAHAPAPSDDEFIIPPFIGHQ 687
>At3g53180.1 68416.m05860 glutamine synthetase, putative similar to
glutamine synthetase (glutamate--ammonia ligase)
[Bacillus subtilis] SWISS-PROT:P12425
Length = 845
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 242 PGRTLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLM 400
PG + +ET LRR ++ DE D +++ GFE + + +R ++ M
Sbjct: 502 PGEAWGYCPRET--LRRVAKVLKDEFDLVMNAGFENEFYLLKNVVREGKEEYM 552
>At5g55740.1 68418.m06948 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 830
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +2
Query: 278 TNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQN 433
+ L C ++ AD G K+ ++I PDR + W+A VQN
Sbjct: 202 SGLEDCVFVASSLADMYGKCGVLDDASKVFDEI-PDRNAVAWNALMVGYVQN 252
>At4g38630.1 68417.m05467 26S proteasome regulatory subunit S5A
(RPN10) identical to multiubiquitin chain binding
protein (MBP1) SP:P55034, GI:1165206
Length = 386
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 532 PXKHQQSGDVVVGRELKRTNVDLDVV 455
P K+++ +VG+ LK+ +V LD+V
Sbjct: 117 PIKYEKKALEIVGKRLKKNSVSLDIV 142
>At3g11070.1 68416.m01337 outer membrane OMP85 family protein
contains Pfam profile PF01103: outer membrane protein,
OMP85 family
Length = 520
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 138 NSLATCCICWANSLVGANTRTIGPSSLSRRG 46
NS C + ++L G TR +GPS R+G
Sbjct: 381 NSSPVCSLSGPSALWGFKTRGVGPSEPKRKG 411
>At1g63940.4 68414.m07242 monodehydroascorbate reductase, putative
similar to monodehydroascorbate reductase GB:AAD28178
[Brassica juncea]
Length = 482
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 161 NTCIFGGAPKGPQGRCLERGVEIVIATPGRTLDFLEKET 277
+TC+ GG + E+G+E++ P DF EK+T
Sbjct: 117 HTCVGGGGERQTPDWYKEKGIEVIYEDPVAGADF-EKQT 154
>At1g63940.3 68414.m07239 monodehydroascorbate reductase, putative
similar to monodehydroascorbate reductase GB:AAD28178
[Brassica juncea]
Length = 416
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 161 NTCIFGGAPKGPQGRCLERGVEIVIATPGRTLDFLEKET 277
+TC+ GG + E+G+E++ P DF EK+T
Sbjct: 117 HTCVGGGGERQTPDWYKEKGIEVIYEDPVAGADF-EKQT 154
>At1g63940.2 68414.m07240 monodehydroascorbate reductase, putative
similar to monodehydroascorbate reductase GB:AAD28178
[Brassica juncea]
Length = 493
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 161 NTCIFGGAPKGPQGRCLERGVEIVIATPGRTLDFLEKET 277
+TC+ GG + E+G+E++ P DF EK+T
Sbjct: 124 HTCVGGGGERQTPDWYKEKGIEVIYEDPVAGADF-EKQT 161
>At1g63940.1 68414.m07241 monodehydroascorbate reductase, putative
similar to monodehydroascorbate reductase GB:AAD28178
[Brassica juncea]
Length = 486
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 161 NTCIFGGAPKGPQGRCLERGVEIVIATPGRTLDFLEKET 277
+TC+ GG + E+G+E++ P DF EK+T
Sbjct: 117 HTCVGGGGERQTPDWYKEKGIEVIYEDPVAGADF-EKQT 154
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,047,691
Number of Sequences: 28952
Number of extensions: 291486
Number of successful extensions: 954
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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