Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0255
         (267 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   0.33 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   0.33 
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    20   4.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    19   7.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    19   7.0  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    19   9.3  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 0.33
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = -1

Query: 138 KIASIQASMSFLFKCFNTFYTICPFFLN*YIEILNFV-----PVHPTRAS 4
           ++ +I     + F+  N+F ++CP  L      L  +     PVHP R +
Sbjct: 334 EVFTITPGRRYRFRMINSFASVCPAQLTIQGHDLTLIATDGEPVHPVRVN 383


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.8 bits (49), Expect = 0.33
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = -1

Query: 138 KIASIQASMSFLFKCFNTFYTICPFFLN*YIEILNFV-----PVHPTRAS 4
           ++ +I     + F+  N+F ++CP  L      L  +     PVHP R +
Sbjct: 334 EVFTITPGRRYRFRMINSFASVCPAQLTIQGHDLTLIATDGEPVHPVRVN 383


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 33  NSKFQYINLKKK 68
           N+KFQYI+ K K
Sbjct: 109 NNKFQYIDEKLK 120


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 19.4 bits (38), Expect = 7.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -1

Query: 162 NQNYFLTDKIASIQASMSFLFKCFNTFYT 76
           N N  +    AS+Q   S  +  F+ FY+
Sbjct: 457 NTNNAIMTPPASVQTESSDNYNSFHQFYS 485


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 19.4 bits (38), Expect = 7.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -1

Query: 162 NQNYFLTDKIASIQASMSFLFKCFNTFYT 76
           N N  +    AS+Q   S  +  F+ FY+
Sbjct: 405 NTNNAIMTPPASVQTESSDNYNSFHQFYS 433


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 26  GTKFKISIYQFKKKGH 73
           G   ++S+ QFK  GH
Sbjct: 207 GVSSEVSLPQFKVLGH 222


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,499
Number of Sequences: 336
Number of extensions: 862
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 47
effective length of database: 106,793
effective search space used:  4378513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)