Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0255
         (267 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    27   0.44 
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       25   1.8  
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    25   1.8  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    24   4.1  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    24   4.1  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    23   7.2  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    23   9.6  

>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 27.1 bits (57), Expect = 0.44
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 129 KQFYQLKNNFG*FFYRPS-FVINLVXSFILG 218
           K  +  K NF  F+Y  + FV+ L+ SFILG
Sbjct: 28  KLLFTGKLNFADFYYNTNPFVVGLLLSFILG 58


>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 147 LTDKIASIQASMSFLFKCFNTFYTICPFFLN 55
           +TD+I S     ++ FK F+TF  +  F  N
Sbjct: 177 VTDRIFSTSIDCNYTFKHFDTFEELAGFDFN 207


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 83  NVLKHLNKKDIDAWIEAILSVKK*FWLIFLSSI 181
           ++L+ LN KDI   ++ ILSV      + LSS+
Sbjct: 9   DLLRRLNPKDISKNLDTILSVAPDLADVLLSSV 41


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -1

Query: 159 QNYFLTDKIASIQASMSFLFKCFNT 85
           +++F   K +   +++ FL+KC N+
Sbjct: 503 KSFFYISKESGTDSALKFLYKCLNS 527


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 183 MMDDKKINQNYFLTDKIASIQASMSFLFKCFNTFYTICPFFLN*YIEILNF 31
           +MD +    NYFL    A    S+SF  +  +  Y       + Y E+LNF
Sbjct: 407 VMDQENSLTNYFLLQNTAIQYLSISFFMRQQSKAYKKL-LLRSLYAELLNF 456


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -1

Query: 123 QASMSFLFKCFNTFYTIC 70
           ++++S L++C  T+Y +C
Sbjct: 698 KSALSSLWRCATTYYKVC 715


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -1

Query: 174 DKKINQNYFLTDKIASIQASMSFLFKCFNTFYTICPFFLN-*YIEILNF 31
           DK    NY  +  ++  QAS +      N+    CP+  N   I +LNF
Sbjct: 336 DKSYKSNYLFSVVLSPHQASWNIYNSFDNSMVLWCPYGKNKTLICLLNF 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 837,458
Number of Sequences: 5004
Number of extensions: 13193
Number of successful extensions: 34
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)