Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0255
         (267 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1225 + 28538515-28538721,28538799-28539000,28539241-285394...    27   2.7  
02_05_1186 + 34816774-34817055,34817216-34817334,34818139-348186...    26   3.6  
02_03_0272 - 17146578-17146691,17146806-17146926,17147260-171473...    26   3.6  
09_02_0504 - 10013784-10014041,10014558-10014660,10014932-100150...    25   8.3  

>06_03_1225 +
           28538515-28538721,28538799-28539000,28539241-28539472,
           28539560-28539713,28539792-28540136
          Length = 379

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 20  CTGTKFKISIYQFKKKGHIV*NVLKHLNKKDIDAWIEAILSVK 148
           C   K KI +Y+F +KG +  N++ H  K  +  W + +  +K
Sbjct: 113 CIHEKEKILVYEFMQKGSLD-NIIFHKRKGALLNWSKRLQIIK 154


>02_05_1186 +
           34816774-34817055,34817216-34817334,34818139-34818664,
           34818760-34818977,34819639-34819966
          Length = 490

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 198 PS*SRMMDDKKINQNYFLTDKIASIQASMSFLFKCF 91
           PS S +   +   +  FLTD + S+   M   FKC+
Sbjct: 287 PSYSLLTTSRSSKEEIFLTDGLTSMWLDMETGFKCY 322


>02_03_0272 -
           17146578-17146691,17146806-17146926,17147260-17147365,
           17147469-17147551,17147688-17147815,17147897-17147983,
           17148064-17148174,17148502-17148669,17148753-17148837,
           17148921-17149037,17149127-17149203,17149299-17149370,
           17150538-17150634,17150750-17150952,17151115-17151217,
           17151324-17151391,17151461-17151514,17151595-17151704,
           17151982-17152060,17152171-17152233,17153410-17153529,
           17153913-17153969,17154071-17154187,17156426-17156476,
           17156591-17156689,17156787-17156935,17158090-17158312
          Length = 953

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 108 FLFKCFNTFYTICPFFLN*YIEILNFVP 25
           F+F CFN  Y + P   + +  IL  VP
Sbjct: 794 FIFACFNQLYKMDPEIFDTWCNILKRVP 821


>09_02_0504 -
           10013784-10014041,10014558-10014660,10014932-10015093,
           10015416-10015549,10015633-10015716,10015839-10016129,
           10016362-10016694,10016823-10016965,10017273-10017429,
           10017513-10017616,10017728-10017888,10017971-10018287,
           10018396-10018677,10018759-10019226,10019338-10019391,
           10019689-10019742,10019943-10020021,10020108-10020196,
           10021153-10021273,10022321-10022637
          Length = 1236

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 129 SIQASMSFLFKCFNTFYTICPFFLN*YIEILN 34
           SI A + ++   FN  YTIC  FL    EI+N
Sbjct: 711 SIGALLGYVL-LFNVLYTICLTFLTHAKEIIN 741


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,616,748
Number of Sequences: 37544
Number of extensions: 61971
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)