Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0255
(267 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40) 32 0.063
SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.19
SB_45063| Best HMM Match : rve (HMM E-Value=2.2e-09) 31 0.19
SB_1216| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.19
SB_46005| Best HMM Match : rve (HMM E-Value=0.00023) 31 0.19
SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 0.19
SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 0.19
SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.19
SB_35170| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_49165| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.3
SB_16427| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=6.2e-29) 25 9.6
>SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40)
Length = 1740
Score = 32.3 bits (70), Expect = 0.063
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 62 KKGHIV*NVLKHLNKKDIDAWIEAILS-VKK*FWLIFLSSIIRD*LG*XIHLR 217
K+ HI +++HL++ + +E +LS +++ FW++ +I+ LG IH R
Sbjct: 1381 KQSHITTILIRHLHESNGHCGVEQVLSLLREQFWIVKARVVIKAVLGRCIHCR 1433
>SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1379
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 62 KKGHIV*NVLKHLNKKDIDAWIEAILS-VKK*FWLIFLSSIIRD*LG*XIHLR 217
K+ HI +++HL++ + +E +LS +++ FW++ I+ LG IH R
Sbjct: 970 KQSHITTILIRHLHESNGHCGVEQVLSLLREQFWIVKARVAIKAVLGRCIHCR 1022
>SB_45063| Best HMM Match : rve (HMM E-Value=2.2e-09)
Length = 310
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 62 KKGHIV*NVLKHLNKKDIDAWIEAILS-VKK*FWLIFLSSIIRD*LG*XIHLR 217
K+ HI +++HL++ + +E +LS +++ FW++ I+ LG IH R
Sbjct: 30 KQSHITTILIRHLHESNGHCGVEQVLSLLREQFWIVKARVAIKAVLGRCIHCR 82
>SB_1216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1834
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 62 KKGHIV*NVLKHLNKKDIDAWIEAILS-VKK*FWLIFLSSIIRD*LG*XIHLR 217
K+ HI +++HL++ + +E +LS +++ FW++ I+ LG IH R
Sbjct: 1455 KQSHITTILIRHLHESNGHCGVEQVLSLLREQFWIVKARVAIKAVLGRCIHCR 1507
>SB_46005| Best HMM Match : rve (HMM E-Value=0.00023)
Length = 380
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 62 KKGHIV*NVLKHLNKKDIDAWIEAILS-VKK*FWLIFLSSIIRD*LG*XIHLR 217
K+ HI +++HL++ + +E +LS +++ FW++ I+ LG IH R
Sbjct: 143 KQSHITTILIRHLHESNGHCGVEQVLSLLREQFWIVKARVAIKAVLGRCIHCR 195
>SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 780
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 62 KKGHIV*NVLKHLNKKDIDAWIEAILS-VKK*FWLIFLSSIIRD*LG*XIHLR 217
K+ HI +++HL++ + +E +LS +++ FW++ I+ LG IH R
Sbjct: 549 KQSHITTILIRHLHESNGHCGVEQVLSLLREQFWIVKARVAIKAVLGRCIHCR 601
>SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1244
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 62 KKGHIV*NVLKHLNKKDIDAWIEAILS-VKK*FWLIFLSSIIRD*LG*XIHLR 217
K+ HI +++HL++ + +E +LS +++ FW++ I+ LG IH R
Sbjct: 1162 KQSHITTILIRHLHESNGHCGVEQVLSLLREQFWIVKARVAIKAVLGRCIHCR 1214
>SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1515
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 62 KKGHIV*NVLKHLNKKDIDAWIEAILS-VKK*FWLIFLSSIIRD*LG*XIHLR 217
K+ HI +++HL++ + +E +LS +++ FW++ I+ LG IH R
Sbjct: 1433 KQSHITTILIRHLHESNGHCGVEQVLSLLREQFWIVKARVAIKAVLGRCIHCR 1485
>SB_35170| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 189 SRMMDDKKINQNYFLTDKIASIQASMSFLFKCFN 88
S+ + + NQ+ FLTD++ + S KCF+
Sbjct: 83 SKCLSHRSANQHVFLTDRLIKMSFSQIGQSKCFS 116
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 189 SRMMDDKKINQNYFLTDKIASIQASMSFLFKCFN 88
S+ + + NQN+FLTD+ + S KC +
Sbjct: 54 SKCLSHRSANQNFFLTDRPIKMSFSQIGQSKCLS 87
>SB_49165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 50 YQFKKKGHIV*NVLKHLNKKDIDAWIEAILSVKK*FWL-IFLSSIIRD*LG 199
+ ++ GH++ NV++ + + ID + E +VK F L F S I D G
Sbjct: 397 FPYRDDGHLILNVIESVVNEYIDIYYEGDEAVKSDFELQNFASEISADGTG 447
>SB_16427| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=6.2e-29)
Length = 251
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 14 VGCTGTKFKISIYQFKKKGHIV*NVLKHLN 103
VG +KF ISIYQ IV N H+N
Sbjct: 148 VGHIDSKFGISIYQVPHIKRIVENTGMHIN 177
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,670,306
Number of Sequences: 59808
Number of extensions: 79291
Number of successful extensions: 163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 16,821,457
effective HSP length: 65
effective length of database: 12,933,937
effective search space used: 297480551
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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