Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0255
         (267 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transfera...    29   0.56 
At5g54610.1 68418.m06800 ankyrin repeat family protein contains ...    25   9.1  

>At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transferase,
           putative similar to O-GlcNAc transferase, Homo sapiens
           [SP|O15294], Rattus norvegicus [SP|P56558]; contains
           Pfam profile PF00515: TPR Domain; identical to cDNA
           GI:18139886
          Length = 977

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 108 FLFKCFNTFYTICPFFLN*YIEILNFVP 25
           F+F CFN  Y + P  +N +  IL  VP
Sbjct: 769 FIFACFNQLYKMDPEIVNTWCNILKRVP 796


>At5g54610.1 68418.m06800 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 426

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 112 VFFI*MFQYILYDMSFFFKLIY 47
           VF   +  Y+++ +SFFF +IY
Sbjct: 365 VFSYFLLMYMMHGLSFFFLIIY 386


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,031,401
Number of Sequences: 28952
Number of extensions: 59076
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 12,070,560
effective HSP length: 67
effective length of database: 10,130,776
effective search space used: 212746296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)