Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0254
(430 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 178 3e-46
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 178 3e-46
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 178 3e-46
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 99 1e-22
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 85 4e-18
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 40 2e-04
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.004
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.004
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 29 0.31
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 29 0.31
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.40
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 28 0.71
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 1.2
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 5.0
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 5.0
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 25 6.6
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 24 8.7
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 24 8.7
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 8.7
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 24 8.7
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 178 bits (434), Expect = 3e-46
Identities = 89/128 (69%), Positives = 94/128 (73%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWVL 224
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA +GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 225 DKLKAXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVAAGT 404
DKLKA RE G + + FI NMITGTSQADCAVLI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Query: 405 GEFXAGIS 428
GEF AGIS
Sbjct: 121 GEFEAGIS 128
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 178 bits (433), Expect = 3e-46
Identities = 88/128 (68%), Positives = 94/128 (73%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWVL 224
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA +GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 225 DKLKAXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVAAGT 404
DKLKA RE G + + FI NMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 405 GEFXAGIS 428
GEF AGIS
Sbjct: 121 GEFEAGIS 128
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 178 bits (433), Expect = 3e-46
Identities = 88/128 (68%), Positives = 94/128 (73%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWVL 224
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA +GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 225 DKLKAXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVAAGT 404
DKLKA RE G + + FI NMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 405 GEFXAGIS 428
GEF AGIS
Sbjct: 121 GEFEAGIS 128
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 99 bits (238), Expect = 1e-22
Identities = 51/122 (41%), Positives = 69/122 (56%)
Frame = +3
Query: 57 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWVLDKLK 236
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 237 AXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVAAGTGEFX 416
RE G + L + ++ NMI G SQAD VL+++A GEF
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 417 AG 422
AG
Sbjct: 356 AG 357
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 85.0 bits (201), Expect = 4e-18
Identities = 46/122 (37%), Positives = 64/122 (52%)
Frame = +3
Query: 57 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWVLDKLK 236
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 237 AXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVAAGTGEFX 416
R G + S + + FI MI G S AD AVL+V + F
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFE 294
Query: 417 AG 422
G
Sbjct: 295 RG 296
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 39.9 bits (89), Expect = 2e-04
Identities = 34/120 (28%), Positives = 50/120 (41%)
Frame = +3
Query: 51 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWVLDK 230
++K H+NI IGHVD GK+T T I KC +G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 231 LKAXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVAAGTGE 410
+ G A + +I NMITG + D A+++V+A G+
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.004
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.004
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 29.1 bits (62), Expect = 0.31
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGI 146
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 29.1 bits (62), Expect = 0.31
Identities = 18/73 (24%), Positives = 35/73 (47%)
Frame = -1
Query: 424 IPAXNSPVPAATMSTAQSA*EVPVIMFXMKCSVXRSINDGXIVXASXELPESNXDXEPXS 245
IP S +P A + + A +V + ++ ++ + S LPE+N E S
Sbjct: 7 IPETPSKLPDALLVNSDPASKVDNVSVKIEQESPLALEGSPLPTVSDVLPETNNAHEEVS 66
Query: 244 RSAFSLSNTQAYL 206
S++SLS++ + +
Sbjct: 67 SSSWSLSSSDSIM 79
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 28.7 bits (61), Expect = 0.40
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCG 140
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 27.9 bits (59), Expect = 0.71
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +3
Query: 252 GSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVAAGTGE 410
G + LSG + A L L + I N+ITGTS +V T E
Sbjct: 247 GRTALCLSGGASFAIYHTGVLRALLNQDLIPNVITGTSGGGLLAALVCTRTNE 299
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 27.1 bits (57), Expect = 1.2
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +2
Query: 266 IALWKFXTSXYYXTIIDAPXHRAFHXEHDHRNLSG*LRCAHRS 394
+ +W F T + + ++ R F + DHR + + C H S
Sbjct: 451 VRIWNFNTGEQHCVLHNSRNSRVFGLQFDHRRI---IACTHSS 490
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 5.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 39 PKMGKEKTHINIVVIGHVDSGKST 110
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.0 bits (52), Expect = 5.0
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = -2
Query: 285 SNFQRAIXXVNQXHXQPLVCPIPKHI*RILYPXXGPPSRTSRWYVCQYHHICRSSDQWWW 106
SN +R + + V +PK I I++ P S S C+Y S D W
Sbjct: 13 SNLRRMNRDHSSNNTNRTVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWR 72
Query: 105 T 103
T
Sbjct: 73 T 73
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 24.6 bits (51), Expect = 6.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGIDK 152
N VI H+D GKST + ++ G I++
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINE 87
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -2
Query: 195 YPXXGPPSRTSRWYVCQYHHICRSSDQW 112
YP PPS ++ H IC S +W
Sbjct: 146 YPVISPPSGRNKENQSPSHQICNLSLKW 173
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 24.2 bits (50), Expect = 8.7
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 144 IDKRTIEKFEKEAXXMGKGSFKYAWVLDKLKAXREXGSXS 263
+D T + K+A K +KY VLDK R GS S
Sbjct: 1102 VDSETASSYAKKAL---KKPYKYDPVLDKYPPSRYLGSVS 1138
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 72 IVVIGHVDSGKSTTTGHLIYKC 137
IVV+G SGKST + +C
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 8.7
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 75 VVIGHVDSGKSTTTGHLIYKCG 140
+V+GH GK+T +Y+ G
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAG 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,384,315
Number of Sequences: 5004
Number of extensions: 20168
Number of successful extensions: 75
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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