Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0254
         (430 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                95   3e-20
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           62   1e-10
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 54   7e-08
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              43   9e-05
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.18 
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  27   6.6  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              27   8.7  

>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 94.7 bits (225), Expect = 3e-20
 Identities = 43/46 (93%), Positives = 44/46 (95%)
 Frame = +3

Query: 45  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA 182
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKES 46


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 32/98 (32%), Positives = 52/98 (53%)
 Frame = +3

Query: 129 YKCGGIDKRTIEKFEKEAXXMGKGSFKYAWVLDKLKAXREXGSXSXLLSGSSXLAXTMXP 308
           Y  G +DKRT+EK+E+EA    + ++  +W LD  +  R+ G+   +   +         
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225

Query: 309 SLMLLXTEHFIXNMITGTSQADCAVLIVAAGTGEFXAG 422
            L     + F+ NMI+G +QAD  VL+++A  GEF  G
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETG 263


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 53.6 bits (123), Expect = 7e-08
 Identities = 30/60 (50%), Positives = 32/60 (53%)
 Frame = +3

Query: 189 MGKGSFKYAWVLDKLKAXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQ 368
           MGKGSFKYAWVLDKLKA RE G    +              +       FI NMITGTSQ
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 43.2 bits (97), Expect = 9e-05
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +3

Query: 336 FIXNMITGTSQADCAVLIVAAGTGEFXAG 422
           FI NMITG +QAD A+L+V A TGEF AG
Sbjct: 26  FIPNMITGAAQADVAILVVDAITGEFEAG 54


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 45  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 60  THINIVVIGHVDSGKSTTTGHLIY 131
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 69   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 167
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 66  INIVVIGHVDSGKSTTTGHLIY 131
           + + V+G+VD+GKST  G L +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTH 251


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 42  KMGKEKTHINIVVIGHVDSGKST 110
           K+ +   + NI V+GHVDSGK++
Sbjct: 28  KIKERILNFNIGVLGHVDSGKTS 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,680,773
Number of Sequences: 59808
Number of extensions: 161934
Number of successful extensions: 289
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)