Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0254
(430 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 185 1e-47
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 185 1e-47
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 185 1e-47
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 167 4e-42
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 134 3e-32
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 114 2e-26
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 114 2e-26
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 98 2e-21
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 36 0.009
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 36 0.009
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 36 0.009
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 36 0.016
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 36 0.016
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.038
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.087
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.11
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.11
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.20
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.35
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.35
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 1.9
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 185 bits (450), Expect = 1e-47
Identities = 93/128 (72%), Positives = 96/128 (75%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWVL 224
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA MGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 225 DKLKAXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVAAGT 404
DKLKA RE G + A + FI NMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 405 GEFXAGIS 428
GEF AGIS
Sbjct: 121 GEFEAGIS 128
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 185 bits (450), Expect = 1e-47
Identities = 93/128 (72%), Positives = 96/128 (75%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWVL 224
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA MGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 225 DKLKAXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVAAGT 404
DKLKA RE G + A + FI NMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 405 GEFXAGIS 428
GEF AGIS
Sbjct: 121 GEFEAGIS 128
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 185 bits (450), Expect = 1e-47
Identities = 93/128 (72%), Positives = 96/128 (75%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWVL 224
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA MGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 225 DKLKAXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVAAGT 404
DKLKA RE G + A + FI NMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 405 GEFXAGIS 428
GEF AGIS
Sbjct: 121 GEFEAGIS 128
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 167 bits (405), Expect = 4e-42
Identities = 84/117 (71%), Positives = 87/117 (74%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWVL 224
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA MGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 225 DKLKAXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVA 395
DKLKA RE G + A + FI NMITGTSQADCAVL+VA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 134 bits (323), Expect = 3e-32
Identities = 61/67 (91%), Positives = 62/67 (92%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWVL 224
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA MGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 225 DKLKAXR 245
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 114 bits (275), Expect = 2e-26
Identities = 59/123 (47%), Positives = 76/123 (61%)
Frame = +3
Query: 54 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWVLDKL 233
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 234 KAXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVAAGTGEF 413
+ RE G + S + L + FI NMITGTSQAD A+L+V A TGEF
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 286
Query: 414 XAG 422
G
Sbjct: 287 ETG 289
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 114 bits (275), Expect = 2e-26
Identities = 59/123 (47%), Positives = 76/123 (61%)
Frame = +3
Query: 54 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWVLDKL 233
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 234 KAXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVAAGTGEF 413
+ RE G + S + L + FI NMITGTSQAD A+L+V A TGEF
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 304
Query: 414 XAG 422
G
Sbjct: 305 ETG 307
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 98.3 bits (234), Expect = 2e-21
Identities = 50/125 (40%), Positives = 70/125 (56%)
Frame = +3
Query: 48 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWVLD 227
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 228 KLKAXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVAAGTG 407
RE G + L + F+ NMI G +QAD AVL+++A G
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRG 223
Query: 408 EFXAG 422
EF G
Sbjct: 224 EFETG 228
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 36.3 bits (80), Expect = 0.009
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Frame = +3
Query: 51 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWV 221
++K H+N+ IGHVD GK+T T ++ G R E + +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 222 LDKLKAXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVAAG 401
L+ A R A P +I NMITG +Q + A+L+VAA
Sbjct: 105 LEYETAKRH-------------YAHIDCPG-----HADYIKNMITGAAQMEGAILVVAAT 146
Query: 402 TG 407
G
Sbjct: 147 DG 148
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 36.3 bits (80), Expect = 0.009
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Frame = +3
Query: 51 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWV 221
++K H+N+ IGHVD GK+T T ++ G R E + +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 222 LDKLKAXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVAAG 401
L+ A R A P +I NMITG +Q + A+L+VAA
Sbjct: 106 LEYETAKRH-------------YAHIDCPG-----HADYIKNMITGAAQMEGAILVVAAT 147
Query: 402 TG 407
G
Sbjct: 148 DG 149
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 36.3 bits (80), Expect = 0.009
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Frame = +3
Query: 51 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWV 221
++K H+N+ IGHVD GK+T T ++ G R E + +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 222 LDKLKAXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVAAG 401
L+ A R A P +I NMITG +Q + A+L+VAA
Sbjct: 106 LEYETAKRH-------------YAHIDCPG-----HADYIKNMITGAAQMEGAILVVAAT 147
Query: 402 TG 407
G
Sbjct: 148 DG 149
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 35.5 bits (78), Expect = 0.016
Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Frame = +3
Query: 57 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWVLDK 230
K ++N+ IGH+D GK+T T + + G K KF++ GK K ++
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE--IDKGKEEKKRGITIN- 97
Query: 231 LKAXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVAAGTG 407
G S L S T P FI NMI GTSQ D AVL++AA G
Sbjct: 98 ---VAHIGYESPLRRYSH----TDCPG-----HSDFIKNMICGTSQMDVAVLVIAATDG 144
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 35.5 bits (78), Expect = 0.016
Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Frame = +3
Query: 57 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWVLDK 230
K ++N+ IGH+D GK+T T + + G K KF++ GK K ++
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE--IDKGKEEKKRGITIN- 97
Query: 231 LKAXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVAAGTG 407
G S L S T P FI NMI GTSQ D AVL++AA G
Sbjct: 98 ---VAHIGYESPLRRYSH----TDCPG-----HSDFIKNMICGTSQMDVAVLVIAATDG 144
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.038
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGI 146
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.087
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGID 149
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.11
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.11
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 31.9 bits (69), Expect = 0.20
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKE 179
N ++ HVD GKST L+ CG + K+ ++K + E
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVE 83
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.35
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 21 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 131
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.35
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 21 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 131
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 66 INIVVIGHVDSGKSTTT 116
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 66 INIVVIGHVDSGKSTTT 116
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,891,914
Number of Sequences: 27780
Number of extensions: 119165
Number of successful extensions: 333
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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