Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0254
         (430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   185   2e-49
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   184   4e-49
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    72   2e-15
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    61   6e-12
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.27 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   0.63 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   1.4  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   7.7  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  185 bits (451), Expect = 2e-49
 Identities = 94/128 (73%), Positives = 97/128 (75%)
 Frame = +3

Query: 45  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWVL 224
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA  MGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 225 DKLKAXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVAAGT 404
           DKLKA RE G    +       +      +       FI NMITGTSQADCAVLIVAAGT
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120

Query: 405 GEFXAGIS 428
           GEF AGIS
Sbjct: 121 GEFEAGIS 128


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  184 bits (448), Expect = 4e-49
 Identities = 94/128 (73%), Positives = 96/128 (75%)
 Frame = +3

Query: 45  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAXXMGKGSFKYAWVL 224
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA  MGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 225 DKLKAXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVAAGT 404
           DKLKA RE G    +       A      +       FI NMITGTSQADCAVLIVAAG 
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGI 120

Query: 405 GEFXAGIS 428
           GEF AGIS
Sbjct: 121 GEFEAGIS 128


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 72.1 bits (169), Expect = 2e-15
 Identities = 40/71 (56%), Positives = 43/71 (60%)
 Frame = +3

Query: 216 WVLDKLKAXREXGSXSXLLSGSSXLAXTMXPSLMLLXTEHFIXNMITGTSQADCAVLIVA 395
           WVLDKLKA RE G    +       +      +       FI NMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 396 AGTGEFXAGIS 428
           AGTGEF AGIS
Sbjct: 61  AGTGEFEAGIS 71


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 60.9 bits (141), Expect = 6e-12
 Identities = 29/31 (93%), Positives = 29/31 (93%)
 Frame = +3

Query: 336 FIXNMITGTSQADCAVLIVAAGTGEFXAGIS 428
           FI NMITGTSQADCAVLIVAAGTGEF AGIS
Sbjct: 25  FIKNMITGTSQADCAVLIVAAGTGEFEAGIS 55



 Score = 44.4 bits (100), Expect = 5e-07
 Identities = 19/24 (79%), Positives = 19/24 (79%)
 Frame = +2

Query: 266 IALWKFXTSXYYXTIIDAPXHRAF 337
           IALWKF TS YY TIIDAP HR F
Sbjct: 2   IALWKFETSKYYVTIIDAPGHRDF 25


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.4 bits (53), Expect = 0.27
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 57  KTHINIVVIGHVDSGKST 110
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.63
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 66  INIVVIGHVDSGKST 110
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 58  FSLPIFG*SRITNCV*Y 8
           FSLPIFG   I +C+ Y
Sbjct: 57  FSLPIFGTRWIFSCIGY 73


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 247 SRSAFSLSNTQAYLKDPLPXXWASFSN 167
           +RS F L N    +KD L   ++ F+N
Sbjct: 78  TRSPFLLLNDPELIKDILIRDFSKFAN 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,707
Number of Sequences: 438
Number of extensions: 1356
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)