Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0253
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    27   2.9  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    25   9.0  

>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
 Frame = +2

Query: 311 SRDQYTKTLFNVTPMRMILKTILFF*IRYYKYTKNYTFMIHSHSLEYLRKRAVETHVCIV 490
           S D    TLF +T    +L T+ F+ ++Y +Y           +L+ L+ R +    C++
Sbjct: 308 SPDSTILTLFTITLSIALLVTLCFYDVKYARYP--------VFALKSLKDRTI-LGSCVL 358

Query: 491 LIMYIIDCFMAIMYVTDII-CQFGISKKIS 577
           +  Y +  ++   ++T  +   +G+S  +S
Sbjct: 359 IFTYFMSYYIFSNFLTSFLQVSYGLSIDMS 388


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -2

Query: 331 LSVLVSGSMTSILVCVVNLLQSYDRRILYALNRILSFTMTVSFHHGRE 188
           + +LV G +  +  C+V+ +Q  D+RI  ++     F    + H   E
Sbjct: 424 IGLLVVGGIVFVSSCIVSYMQIRDKRIKRSIQDAKDFDDVFTEHESLE 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,000
Number of Sequences: 5004
Number of extensions: 60807
Number of successful extensions: 134
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)