Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0253
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016675-4|AAB66137.1|  356|Caenorhabditis elegans Hypothetical ...    30   2.1  
AF016668-7|AAB66091.3|  471|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z83231-1|CAB05749.1|  357|Caenorhabditis elegans Hypothetical pr...    29   4.8  

>AF016675-4|AAB66137.1|  356|Caenorhabditis elegans Hypothetical
           protein T27B7.5 protein.
          Length = 356

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 615 RPLIVYQY*E*QKLIFLLIPNWQIISVTYIIAMKQSIMYIINTMHTCVSTARFRK 451
           RP+I Y     + LIF    N         I + Q+I ++ + +H C STA +RK
Sbjct: 139 RPIISYYVGRPEFLIFFDDSNVTTQKTFIDIIIVQAIWHVWSKVHKCASTALYRK 193


>AF016668-7|AAB66091.3|  471|Caenorhabditis elegans Hypothetical
           protein F36H9.1 protein.
          Length = 471

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 568 FTYSKLANNICYVHYCHETVYYVHNQY-YAYVCFNCP 461
           F+   + +N C+ HYC     Y+ N +  AY   N P
Sbjct: 108 FSQDLIEDNYCFGHYCTYEQEYIRNDFGDAYTSINSP 144


>Z83231-1|CAB05749.1|  357|Caenorhabditis elegans Hypothetical
           protein F57G9.1 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 401 KYTKNYTFMIHSHSLEYLRKRAVETHVCIVLIMYIIDCFMAIMYVT-DII 547
           K T+ +T        E LR   + T +  V+++YI+ CF+ I+ +T D+I
Sbjct: 227 KRTRIFTLSQQCQVKENLRALRLGTRLVAVVLVYIMVCFLGIVSLTFDLI 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,201,999
Number of Sequences: 27780
Number of extensions: 329849
Number of successful extensions: 820
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)