Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0253
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   9.5  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 573 IFLLIPNWQIISVTYIIAMKQSIMYI 496
           + LL   WQ+I +  +IA+   IMYI
Sbjct: 392 LVLLNFGWQMICLIVVIALVSIIMYI 417


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = -2

Query: 595 ILGITKTNLFTYSKLANNICYVHYCHETVYYV 500
           + G+T +++  YS++   +C+V  C   +Y++
Sbjct: 396 LYGMTPSDIDKYSRIVFPVCFV--CFNLMYWI 425


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = -2

Query: 595 ILGITKTNLFTYSKLANNICYVHYCHETVYYV 500
           + G+T +++  YS++   +C+V  C   +Y++
Sbjct: 396 LYGMTPSDIDKYSRIVFPVCFV--CFNLMYWI 425


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = -2

Query: 595 ILGITKTNLFTYSKLANNICYVHYCHETVYYV 500
           + G+T +++  YS++   +C+V  C   +Y++
Sbjct: 334 LYGMTPSDIDKYSRIVFPVCFV--CFNLMYWI 363


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 499 HNQYYAYVCFNCPFS 455
           H+  Y Y C NC ++
Sbjct: 39  HSNVYQYRCANCTYA 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,061
Number of Sequences: 438
Number of extensions: 4735
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)