Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0251
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    99   3e-22
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    27   3.0  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   9.1  
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|...    25   9.1  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =   99 bits (238), Expect = 3e-22
 Identities = 57/128 (44%), Positives = 75/128 (58%)
 Frame = +1

Query: 58  ALLSVSDKTGLLSLAKSLSECGLQLIASXGTATXASERXPHSSRCVGHHESTGDARRSGE 237
           ALLSV DKTGLL LAK+L+  G++L+ S GTA    E     +       +        +
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 238 NFTSSGHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVXSVSXXXVTVADAVENIDI 417
               + H GILAR   SD++D+  Q  E I +VVCNLYPF  +++   VT+ +AVE IDI
Sbjct: 63  TLHPAVHGGILARDIPSDEKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEEIDI 122

Query: 418 GXVTLLRA 441
           G VTLLRA
Sbjct: 123 GGVTLLRA 130



 Score = 32.3 bits (70), Expect = 0.079
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +3

Query: 444 AKXHDRVTVVCXPADYDAVVKE---SKRTNIIRRLWAQGRD*P*RRFTHTSDYGPRHIRD 614
           AK H RVT++  PADY     +    K T   R  +A       + F  T+ Y    I D
Sbjct: 132 AKNHARVTILSDPADYATFTDKFLSDKLTQDDRNTYAL------KAFASTASYDAA-ITD 184

Query: 615 YFRKXYFA 638
           YFRK Y A
Sbjct: 185 YFRKQYAA 192



 Score = 25.8 bits (54), Expect = 6.9
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +2

Query: 536 TLGTRQRLALKAFHSYFGLWTSPYSGLLPQAILRX---GQAQLTLRYGMNP 679
           T   R   ALKAF S     T+ Y   +     +    G  QLTLRYG NP
Sbjct: 160 TQDDRNTYALKAFAS-----TASYDAAITDYFRKQYAAGVDQLTLRYGANP 205


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 205 ESTGDARRSGENFTSSGHAGILARLSDSDQEDMKR 309
           + TG A  SGENFT++    IL   +D   E  ++
Sbjct: 677 QETGYAINSGENFTTAARHAILDLTNDEGIEQSRK 711


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 15  VVLEQTEHGVKWKTSSSQRFRQDGS 89
           V ++  +HG++W T   Q F +  S
Sbjct: 641 VAIDYRDHGIRWVTLGEQNFGEGSS 665


>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +1

Query: 208 STGDARRSGENFTSSGHAGILARLSDSDQEDMKRQKYEMI 327
           + G   R+G+ +T    +G+L  + DSD +D +++K  ++
Sbjct: 184 AAGYPSRTGQEYTDR-FSGLLQAIEDSDLKDGQKRKLHVL 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,684
Number of Sequences: 5004
Number of extensions: 46821
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)