Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0251
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 66 4e-11
08_01_0621 - 5426210-5427787 32 0.44
05_01_0382 + 2985526-2986659 32 0.58
03_02_0505 + 8981856-8982879,8983014-8983129,8985407-8985994,898... 30 2.3
11_02_0149 - 8801675-8804332 29 4.1
05_01_0380 + 2978256-2979284 29 4.1
11_06_0257 + 21746643-21748091 29 5.4
05_06_0138 + 25946545-25946632,25946715-25947489,25947627-259479... 28 7.2
05_01_0379 + 2975701-2976831 28 9.5
01_01_0361 + 2838979-2841745,2841897-2842285 28 9.5
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 65.7 bits (153), Expect = 4e-11
Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Frame = +1
Query: 52 KLALLSVSDKTGLLSLAKSLSECGLQLIASXGTATXASERXPHSSRC--VGHHESTGDAR 225
K AL+S+SDKT L L L G +I++ GTA+ + ++ + + D R
Sbjct: 46 KQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGR 105
Query: 226 RSGENFTSSGHAGILARLSDSDQ-EDMKRQKYEMISVVVCNLYPFVXSVSXXXVTVADAV 402
+ S H GILAR + + VVV NLYPF V+ ++ D +
Sbjct: 106 V--KTLHPSVHGGILARRDQEHHLKALNEHGIGTFDVVVVNLYPFYNKVTSGVISFEDGI 163
Query: 403 ENIDIGXVTLLRA 441
ENIDIG T++RA
Sbjct: 164 ENIDIGGPTMIRA 176
>08_01_0621 - 5426210-5427787
Length = 525
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 500 YSIVVGRVTDDGDPVVXLGCARRRVTXP 417
YS+ GR+ DDGD + + C RR V+ P
Sbjct: 140 YSLAEGRMCDDGDVRLPMACRRRYVSSP 167
>05_01_0382 + 2985526-2986659
Length = 377
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -1
Query: 732 VNRQAVSGREYLGXHSDVGFIPYLKVSWACPXRSXACGSSPEY 604
V R AV+G EY H+ + ++V ACP + CG++P Y
Sbjct: 162 VCRAAVAGGEYRRCHALERLVDAIRV--ACPHAAHGCGATPAY 202
>03_02_0505 +
8981856-8982879,8983014-8983129,8985407-8985994,
8986091-8986192
Length = 609
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +3
Query: 84 GSTLVSKEPVGMWPAVDCQXRYR----HGRFGTXASQFKMCR 197
G + ++PVG WPA C YR RFG AS +M R
Sbjct: 129 GHVWLDEQPVGPWPAATCPP-YRVSADASRFGDRASASRMAR 169
>11_02_0149 - 8801675-8804332
Length = 885
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 25 SKQNMASNGKLALLSVSDKTGLLSLAKSLSECGLQL 132
S QN+ S G +ALL+ ++ T + S + S +E G QL
Sbjct: 553 SCQNVTSMGVMALLATAEPTSMPSSSTSSNETGSQL 588
>05_01_0380 + 2978256-2979284
Length = 342
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1
Query: 732 VNRQAVSGREYLGXHSDVGFIPYLKVSWACPXRSXACGSSPEY 604
V R AV+G EY ++ + ++V ACP + CG++P Y
Sbjct: 111 VCRVAVAGGEYRRCYALERLVDAIRV--ACPHAAHGCGATPAY 151
>11_06_0257 + 21746643-21748091
Length = 482
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 220 HLRCSRDVRHILNCEAXVPKRPWRYRXWQST 128
HL C++ R+++N + WR+R W S+
Sbjct: 300 HLPCAQPCRYLVNTPSGELLHVWRFRQWVSS 330
>05_06_0138 +
25946545-25946632,25946715-25947489,25947627-25947910,
25948100-25948238,25948323-25948394,25948477-25948548,
25948726-25948806,25948894-25949054,25949162-25949424,
25949661-25949787,25949974-25950042,25950154-25950346,
25950446-25950860
Length = 912
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 524 HHQTTLGTRQRLALKAFHSYFGLWTSPYSGLLPQAILRXGQ-AQLTLRYGMNP 679
H+ T ++ F + L + +G +P ++L+ Q LTLRYG NP
Sbjct: 457 HNNLTGSIPNVISQLQFLAVLDLTGNQLNGSIPSSLLKRSQDGSLTLRYGNNP 509
>05_01_0379 + 2975701-2976831
Length = 376
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -1
Query: 732 VNRQAVSGREYLGXHSDVGFIPYLKVSWACPXRSXACGSSPEYGEVHS 589
V R AV+G EY ++ + ++V ACP + C + P Y +V +
Sbjct: 161 VCRVAVAGGEYRRCYALERLVDAIRV--ACPHAAHGCAARPAYHDVEA 206
>01_01_0361 + 2838979-2841745,2841897-2842285
Length = 1051
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 581 YFGLWTSPYSGLLPQAILRXGQAQLTLRYG 670
YFGL + +SG++P ++ + L YG
Sbjct: 274 YFGLADNQFSGVIPSSLFNLSSLTIVLLYG 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,648,195
Number of Sequences: 37544
Number of extensions: 341960
Number of successful extensions: 915
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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