Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0251
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)             110   1e-24
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)                      77   2e-14
SB_59447| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_52990| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)                 28   9.6  
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   9.6  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score =  110 bits (264), Expect = 1e-24
 Identities = 70/143 (48%), Positives = 88/143 (61%), Gaps = 5/143 (3%)
 Frame = +1

Query: 28  KQNMAS--NGKLALLSVSDKTGLLSLAKSLSECGLQLIASXGTATXASERXPHSSRCVGH 201
           K+ MA+   G LALLSVS+K GL+  AK L + G +L+AS GTA  A        R V  
Sbjct: 24  KKKMAAVGAGSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTAN-AIRNAGIPVRDVS- 81

Query: 202 HESTGDARRSG---ENFTSSGHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVXSVS 372
            E TG     G   +    + H GILAR+S+ D+ DM +Q +E I VVVCNLYPFV +V+
Sbjct: 82  -EITGAPEMLGGRVKTLHPAVHGGILARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVA 140

Query: 373 XXXVTVADAVENIDIGXVTLLRA 441
              V V++AVE IDIG VTLLRA
Sbjct: 141 KEGVIVSEAVEQIDIGGVTLLRA 163



 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 26/63 (41%), Positives = 33/63 (52%)
 Frame = +3

Query: 444 AKXHDRVTVVCXPADYDAVVKESKRTNIIRRLWAQGRD*P*RRFTHTSDYGPRHIRDYFR 623
           AK H+RVTVVC P DY+ V+ E         L    +    + F+HT+ Y    I DYFR
Sbjct: 165 AKNHERVTVVCDPEDYNKVLSEMTENETCDTLPDTRKTLALKAFSHTASY-DMAISDYFR 223

Query: 624 KXY 632
           K Y
Sbjct: 224 KEY 226



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 515 ENKHHQTTLGTRQRLALKAFHSYFGLWTSPYSGLLPQAILRXGQAQLTLRYGMNP 679
           EN+   T   TR+ LALKAF S+   +    S    +       + + LRYGMNP
Sbjct: 189 ENETCDTLPDTRKTLALKAF-SHTASYDMAISDYFRKEYSE-NVSHIPLRYGMNP 241


>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
          Length = 79

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 37/59 (62%), Positives = 46/59 (77%)
 Frame = +1

Query: 265 ILARLSDSDQEDMKRQKYEMISVVVCNLYPFVXSVSXXXVTVADAVENIDIGXVTLLRA 441
           ILAR+S+ D+ DM +Q +E I VVVCNLYPFV +V+   V V++AVE IDIG VTLLRA
Sbjct: 2   ILARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 60



 Score = 31.5 bits (68), Expect = 0.78
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 444 AKXHDRVTVVCXPADYD 494
           AK H+RVTVVC P DY+
Sbjct: 62  AKNHERVTVVCDPEDYN 78


>SB_59447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1094

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +1

Query: 19   CLSKQNMASNGKLALLSVSDKT-GLLSLAKSLS----ECGLQLIASXGTATXASERXPHS 183
            C +K+N+A  G + LL+  D   G   LAK +     + GL   A   TAT   ER  H 
Sbjct: 1010 CDTKRNIAV-GDIVLLADDDTPRGHWKLAKVIEVKPDDRGLVRSARIKTATTTLERPVHK 1068

Query: 184  SRCVGHHESTGDARRSGENFTSSG 255
               +  HE + D  R  ++ T +G
Sbjct: 1069 LVLLLEHEDSTDESRKRDDSTEAG 1092


>SB_52990| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 782

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 9   YTVVLEQTEHGVKWKTSSSQRFRQDGSTLVSKEPVG 116
           YT+ LE T  G KWK  S+ +  +    +  KE +G
Sbjct: 416 YTIALESTSVGAKWKLKSTPQDSERFVQMAMKELLG 451


>SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)
          Length = 714

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = +1

Query: 388 VADAVENIDIGXVTLLRAQPRX--TTGSPSSVTR---PTTML*SKNQREQTSSDDFGHKA 552
           +A AV N+ +   T LR  P    TTGSPS VTR   P  ++ S   +  TSS   G   
Sbjct: 246 IAPAVTNL-VTLSTALRVLPSTSATTGSPSFVTRQGVPVRIVTSSGSQVATSS---GVVR 301

Query: 553 EISPEG 570
            ++P G
Sbjct: 302 AVTPSG 307


>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 645

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 45  KWKTSSSQRFRQDGSTLVSKEP 110
           +W T  ++R+R+DGS ++  EP
Sbjct: 334 QWHTVVAERYRRDGSLILDSEP 355


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,183,776
Number of Sequences: 59808
Number of extensions: 384785
Number of successful extensions: 841
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)