Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0251
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical pr...   101   4e-22
U70852-5|AAK29817.2|  322|Caenorhabditis elegans Hypothetical pr...    29   4.9  

>U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical
           protein C55F2.1b protein.
          Length = 594

 Score =  101 bits (243), Expect = 4e-22
 Identities = 61/137 (44%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
 Frame = +1

Query: 37  MASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASXGTATXASERX--PHSSRCVGHHES 210
           M     LA++SVSDKTGL+ LA  L   GL LIAS GTA    ++    H    V     
Sbjct: 1   MTDGKSLAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVTKFPE 60

Query: 211 TGDARRSGENFTSSGHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVXSVSXXXVTV 390
               R   +    + H GILAR ++SD++D+++     +SVVVCNLYPF  +V     +V
Sbjct: 61  MLGGRV--KTLHPAVHGGILARDTESDRKDLEKHNISFVSVVVCNLYPFKKTVQSKDCSV 118

Query: 391 ADAVENIDIGXVTLLRA 441
            +AVENIDIG VTLLRA
Sbjct: 119 EEAVENIDIGGVTLLRA 135



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 26/81 (32%), Positives = 39/81 (48%)
 Frame = +3

Query: 444 AKXHDRVTVVCXPADYDAVVKESKRTNIIRRLWAQGRD*P*RRFTHTSDYGPRHIRDYFR 623
           AK H+RV+V+C PADYD ++ E K     R    + +    + F HT+ Y    I  + R
Sbjct: 137 AKNHERVSVICDPADYDHIISELKSGGTTRE---RRQLLALKAFEHTTSY-DESISGFMR 192

Query: 624 KXYFARGKPN*P*DTV*IPHQ 686
           + +   G+   P      PHQ
Sbjct: 193 RRFAGNGERALPLRYGTNPHQ 213


>U70852-5|AAK29817.2|  322|Caenorhabditis elegans Hypothetical
           protein F45E4.6 protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 319 EMISVVVCNLYPFVXSVSXXXVTVADAVENIDIGXVTLLRAQPRXTTGSPSSVTR 483
           + I   + +LYPFV  +     T ADAV++ +      + +  R TT +  + T+
Sbjct: 244 DRIDFTLYDLYPFVGKLGGCIYTEADAVDDKNSIHTLFIYSTTRTTTTTAKTTTK 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,188,694
Number of Sequences: 27780
Number of extensions: 273284
Number of successful extensions: 637
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)