Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0251
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.78 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   4.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   7.3  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = +2

Query: 134 LPVAVPPRXLRNAGLTVQDVSDIT---RAPEMLGGRVKTLH 247
           +P   PP   +N  +   D S +     AP MLGGR  T +
Sbjct: 312 MPCTQPPSAPQNLTVNFVDQSTVFLSWNAPHMLGGRTDTTY 352


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 241 FTSSGHAGILARLSDSDQEDMKRQKYEMISVVVCNLYP 354
           F + G  G+L  L+++D       KY++I+    N  P
Sbjct: 7   FLAVGLFGVLLLLTNADNSVHILSKYQLITSTTLNWLP 44


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 122 PHSDRLFANESRPVLSETLRRASFPFDAMFCLLK 21
           P+ D L+   +    S T+    FPFD   C++K
Sbjct: 135 PNGDVLWVPPAIYQSSCTIDVTYFPFDQQTCIMK 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,885
Number of Sequences: 438
Number of extensions: 3213
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)