Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0250
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0463 + 3502708-3503535 38 0.011
11_06_0289 - 21969248-21973516 33 0.24
11_06_0185 + 21018045-21022307 33 0.24
08_02_0921 - 22640125-22640268,22640349-22640423,22640496-226407... 31 0.97
01_06_0042 - 25911662-25911736,25912409-25912607,25913275-259133... 30 2.2
10_07_0177 - 13841148-13841267,13841569-13841645,13842710-138428... 29 5.2
08_02_0955 + 22994266-22995630 29 5.2
06_03_0047 - 15872817-15872911,15873648-15873897 29 5.2
02_05_1282 + 35442730-35442841,35443040-35443105,35443195-354432... 29 5.2
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 29 5.2
01_06_1106 + 34563368-34563679 28 6.9
11_02_0052 + 7788655-7789850,7789921-7790011 28 9.1
05_01_0155 + 1043045-1043240,1043325-1043401,1043963-1044092,104... 28 9.1
03_04_0159 + 17832666-17832938,17833634-17833873 28 9.1
>07_01_0463 + 3502708-3503535
Length = 275
Score = 37.5 bits (83), Expect = 0.011
Identities = 22/69 (31%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Frame = +1
Query: 316 EQTNN--FIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAE-V 486
E+TN+ + A E +D K++ + K+E + +L+ +LK+ LEG K++ +E++ A+ +
Sbjct: 180 EKTNDPAKLKAKLEKIDTKIQDLQAKKEDILRQLKEQLKEELEG-GKSKNAIEEKPAQTL 238
Query: 487 YKAIEDKRP 513
K IE +P
Sbjct: 239 EKGIEHNKP 247
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 349 EALDAKMETHE--EKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAI 498
+A + ++TH+ E + I +L RLKDH+E EKT+ EQ E A+
Sbjct: 385 QAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAV 436
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 349 EALDAKMETHE--EKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAI 498
+A + ++TH+ E + I +L RLKDH+E EKT+ EQ E A+
Sbjct: 385 QAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAV 436
>08_02_0921 -
22640125-22640268,22640349-22640423,22640496-22640757,
22642286-22642578,22642609-22642812,22643216-22643901,
22643958-22644033
Length = 579
Score = 31.1 bits (67), Expect = 0.97
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -2
Query: 274 EQWRPSYSFQATSPLFSCLQL-LXDLFDGRSLFG*VGATGNRYAHRLREYHLVRQTALRH 98
E W P+Y+FQ S LFSC +L DL R +G G +LR + + + +
Sbjct: 105 ELWFPTYNFQLHSCLFSCRELACLDLDSCRLPPARMGFEGFPNLKKLRLHEVTLPEHMGN 164
Query: 97 LLAA 86
+LAA
Sbjct: 165 MLAA 168
>01_06_0042 -
25911662-25911736,25912409-25912607,25913275-25913348,
25913431-25913580,25913666-25913821,25915378-25915464,
25915706-25915765,25915878-25916414,25917292-25917585
Length = 543
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +3
Query: 285 QDRGGVPHPQRADE*LHRRHQGGSRRQDGDPRGKTRGLHQRAALPSQG 428
+DRGG HP+RA E R +R +GD R +R SQG
Sbjct: 32 EDRGGHRHPERAGEEQERAED--DKRDEGDGERDAREDKERREGDSQG 77
>10_07_0177 -
13841148-13841267,13841569-13841645,13842710-13842860,
13842942-13843056,13843145-13843236,13843317-13843370,
13843849-13843935,13844023-13844109,13844191-13844274,
13844359-13844445,13844793-13845549,13846491-13846648
Length = 622
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 673 SVGGLLQASPGNGALEAAGTSPGCRRGPCELVP 575
S G + ++ G+G++ G SPG GP L P
Sbjct: 132 STGSGVLSTTGSGSMSNLGQSPGLNNGPVPLYP 164
>08_02_0955 + 22994266-22995630
Length = 454
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 383 KNARPTSTSCAPVSRIILRALRRPG*PWNSRPRKCTRP-SKIRDHSXRQARREPQ 544
+++R +T P+S + A RRP + R+ RP S HS Q +R P+
Sbjct: 137 RSSRVEATGVKPISSRPMDASRRPAAASSQSQRRSKRPRSSPTQHSPEQHKRPPR 191
>06_03_0047 - 15872817-15872911,15873648-15873897
Length = 114
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 635 RSRSCWNFSWLPARTLRTCXSC 570
+S CWN W PA TLRT C
Sbjct: 21 KSSKCWNQIWQPA-TLRTSNGC 41
>02_05_1282 +
35442730-35442841,35443040-35443105,35443195-35443282,
35443393-35443474,35443589-35443740,35443866-35443990,
35444309-35444367
Length = 227
Score = 28.7 bits (61), Expect = 5.2
Identities = 24/79 (30%), Positives = 33/79 (41%)
Frame = +1
Query: 346 KEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDKRPQLPX 525
K A++AK+ T EEK E + E EK R Q A ++KA E+KR +
Sbjct: 105 KAAIEAKLRTQEEKLE----------RKKAEYAEKMR----NQVAAIHKAAEEKRATVEA 150
Query: 526 XXXXXXXXXXXVCAKHEXQ 582
+ AKH Q
Sbjct: 151 TRHEEIIKYEEMAAKHSLQ 169
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 310 RSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGV 444
RS +++I+ +K + TH+E E+ +NE ++ +K L+ V
Sbjct: 139 RSILKSSYIIVSKRGKFPTLVTHQESLESKVNETKATVKFQLKKV 183
>01_06_1106 + 34563368-34563679
Length = 103
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Frame = +3
Query: 582 SSQGPRRQPGEVPAASRAPFPGE------ACSRPP 668
SSQ P R PG VP ++ AP P E C RPP
Sbjct: 28 SSQAPPR-PGRVPPSASAPPPAELRHGPNRCRRPP 61
>11_02_0052 + 7788655-7789850,7789921-7790011
Length = 428
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 596 RTLRTCXSCFAQTXDHLLEVLVALVGSCGL 507
+ LR C + A D ++ VAL+G CGL
Sbjct: 168 KILRRCNAILATDVDRVVRPNVALLGECGL 197
>05_01_0155 +
1043045-1043240,1043325-1043401,1043963-1044092,
1044376-1044473,1045622-1045729,1045748-1045800,
1046876-1047080
Length = 288
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 361 AKMETHEEKREAYINELRS--RLKDHLEGVEKTRLTLEQQTAE 483
A+ E++ K + N S L++H++ +EKT +T Q++ E
Sbjct: 83 AEAESYASKEQVRYNRFLSPRALREHIKNIEKTAVTALQESPE 125
>03_04_0159 + 17832666-17832938,17833634-17833873
Length = 170
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 576 GTSSQGPRRQPGEVPAASRA 635
G QGPRR+ G VPAA+ A
Sbjct: 40 GPGDQGPRRRRGVVPAAAAA 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,496,669
Number of Sequences: 37544
Number of extensions: 342338
Number of successful extensions: 1467
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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