Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0250
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei...    29   2.5  
At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltran...    29   2.5  
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m...    29   2.5  
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila...    29   4.3  
At1g67230.1 68414.m07652 expressed protein                             29   4.3  
At1g40133.1 68414.m04768 hypothetical protein                          29   4.3  
At5g42950.1 68418.m05236 GYF domain-containing protein contains ...    28   5.7  
At5g15810.1 68418.m01850 N2,N2-dimethylguanosine tRNA methyltran...    28   5.7  
At5g64870.1 68418.m08160 expressed protein                             28   7.6  
At3g62690.1 68416.m07042 zinc finger (C3HC4-type RING finger) fa...    28   7.6  
At1g75590.1 68414.m08783 auxin-responsive family protein similar...    28   7.6  
At5g61040.1 68418.m07660 expressed protein                             27   10.0 
At5g08780.1 68418.m01041 histone H1/H5 family protein contains P...    27   10.0 
At4g17220.1 68417.m02590 expressed protein                             27   10.0 
At1g42960.1 68414.m04946 expressed protein                             27   10.0 

>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
           protein-related similar to matrix-localized MAR DNA
           binding protein MFP1 GI:1771158 from [Lycopersicon
           esculentum]
          Length = 726

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
 Frame = +1

Query: 346 KEALDAKMETHEEKREAYINEL------RSRLKDHLEGV-------EKTRLTLEQQTAEV 486
           KE  +  ++  ++K E   +EL      R R+KD LEGV            +L+++  E+
Sbjct: 489 KERYERNLDAEKQKNEISASELALEKDLRRRVKDELEGVTHELKESSVKNQSLQKELVEI 548

Query: 487 YKAIEDKRPQL 519
           YK +E    +L
Sbjct: 549 YKKVETSNKEL 559


>At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA
           methyltransferase family protein similar to
           N2,N2-dimethylguanosine tRNA methyltransferase [Homo
           sapiens] GI:11066198; contains Pfam profile PF02005:
           N2,N2-dimethylguanosine tRNA methyltransferase
          Length = 599

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 565 AKHEXQVRKVRAGNQEKFQQLRERHSQEKLAAGRRPTSAHXKLXQRE 705
           ++H   + K +A    +F    E+H   KL AGR+ TS H  L   E
Sbjct: 508 SRHIGSLSKAQAKKVARFLPNPEKHWGPKLRAGRQITSKHVSLIGHE 554


>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
           myosin heavy chain (GI:1850913) [Entamoeba histolytica];
           similar to Intracellular protein transport protein USO1
           (Swiss-Prot:P25386) [Saccharomyces cerevisiae]
          Length = 555

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = +1

Query: 343 TKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDKRPQLP 522
           T+  L+ K+E  +++R+    EL S+ KDH   +E+    L+ Q  E    +E ++ + P
Sbjct: 196 TESDLNQKLEDVKKERDGLEAELASKAKDHESTLEEVN-RLQGQKNETEAELEREKQEKP 254


>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
           to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
           sylvestris]; contains Pfam profile: PF00076 RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 245

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 342 HQGGSRRQDGDPRGKTRGLHQRAALPSQGSS*G 440
           HQGG+ R +   RG+ RG  +  + PS G   G
Sbjct: 86  HQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGG 118


>At1g67230.1 68414.m07652 expressed protein
          Length = 1132

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 334 IVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQ-TAEVYKAIEDK 507
           +   ++ALD K+E H+EK     N+   RLK  + G EK   + E+    E  K +EDK
Sbjct: 392 VAKREQALDRKLEKHKEKE----NDFDLRLKG-ISGREKALKSEEKALETEKKKLLEDK 445


>At1g40133.1 68414.m04768 hypothetical protein
          Length = 663

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 319 QTNNFIVATKEALDAKMETHEEKREAYINE 408
           + NN   A  +A  AKME  E +REA++N+
Sbjct: 474 EANNRDEALSQAAAAKMEKEEVEREAFVNK 503


>At5g42950.1 68418.m05236 GYF domain-containing protein contains Pfam
            profile: PF02213 GYF domain
          Length = 1714

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 452  PG*PWNSRPRKCTRPSKIRD 511
            P   W+S P+K T+PS +RD
Sbjct: 1413 PAAAWSSGPKKSTKPSSLRD 1432


>At5g15810.1 68418.m01850 N2,N2-dimethylguanosine tRNA
           methyltransferase family protein similar to SP|Q9P804
           N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC
           2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase)
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF02005: N2,N2-dimethylguanosine tRNA methyltransferase
          Length = 691

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 565 AKHEXQVRKVRAGNQEKFQQLRERHSQEKLAAGRRPTSAHXKLXQRE 705
           ++H   + K +A    +F    E+H   K+ AGR  TS H  L   E
Sbjct: 596 SRHVGSLSKAQAKKVARFLPNPEKHWGPKIRAGRTITSKHVSLLGHE 642


>At5g64870.1 68418.m08160 expressed protein
          Length = 479

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 2   ASDAIQLFRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYEVILAE 139
           A+ A+ L  +  + KVE M   T++ +++ + +SK  + YE  + E
Sbjct: 268 AAKAVALREAELQTKVEKMNALTRTEKLKAEFLSKASVEYETKVQE 313


>At3g62690.1 68416.m07042 zinc finger (C3HC4-type RING finger)
           family protein (ATL5) identical to RING-H2 zinc finger
           protein ATL5 [Arabidopsis thaliana]
           gi|4928401|gb|AAD33583
          Length = 257

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 576 GTSSQGPRRQPGEVPAASRAP--FPGEACSRPPTDVCSLXALXERE 707
           G+SS     +     ++S +P  FP EAC R P D+  +     RE
Sbjct: 186 GSSSSSDESESSTPSSSSGSPVRFPMEACEREPIDLVGIIVEIPRE 231


>At1g75590.1 68414.m08783 auxin-responsive family protein similar to
           auxin-induced protein TGSAUR22 (GI:10185820) [Tulipa
           gesneriana]
          Length = 154

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 540 LKKMIXRLRET*GTSSQGPRRQPGEVPAASRAPFPGEACSR 662
           L++M+ R R+    SS   R  P +VP+   A + G +C R
Sbjct: 17  LRQMLRRWRDQARMSSSFSRCVPSDVPSGHVAVYVGSSCRR 57


>At5g61040.1 68418.m07660 expressed protein
          Length = 590

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 313 SEQTNNFIVATKEALDA-KMETHEEKREAYINELRSRLKDHLEGVEKTR 456
           S   ++F V  +E LD   +E  EEK   ++NE+  +L   +  VEKT+
Sbjct: 521 SHHKDDFKVQEQELLDLIGIEDEEEKSSDFVNEMEKQLIKQI--VEKTK 567


>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family
          Length = 457

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 47  VEAMEVETKSTEIRCQEMSKGGLAYEV 127
           VE ++VE    E R +  S+GG  YEV
Sbjct: 229 VEVVDVENSENEARIEANSRGGELYEV 255


>At4g17220.1 68417.m02590 expressed protein
          Length = 513

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +1

Query: 334 IVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDKRP 513
           ++A K  ++A + T+EE ++    ELR  ++   E +  T   ++Q+  E  K  E+K  
Sbjct: 26  LLAAKAEVEA-LRTNEELKDRVFKELRENVRKLEEKLGATENQVDQKELERKKLEEEKED 84

Query: 514 QL 519
            L
Sbjct: 85  AL 86


>At1g42960.1 68414.m04946 expressed protein
          Length = 168

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 388 REAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDKRPQL 519
           R+  + +L   + D  + +EKTR  L ++ A++  AI+D   QL
Sbjct: 105 RKDLMRKLPKFIYDEEKALEKTRKVLAEKIAQLNSAIDDVSSQL 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,102,124
Number of Sequences: 28952
Number of extensions: 234921
Number of successful extensions: 873
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)