Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0249
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.42
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 2.2
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 27 3.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.9
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 3.9
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma... 27 3.9
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 5.1
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 26 5.1
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 6.8
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 9.0
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po... 25 9.0
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 9.0
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.9 bits (64), Expect = 0.42
Identities = 20/73 (27%), Positives = 41/73 (56%)
Frame = +2
Query: 266 ASSSSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETV 445
+SSSS +P + ++ S + S+ + +SS+ + TSS ST+++S S +
Sbjct: 293 SSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSS 352
Query: 446 ATYWRTTTSIETS 484
+++ TT+S ++S
Sbjct: 353 SSFSSTTSSSKSS 365
Score = 27.1 bits (57), Expect = 2.9
Identities = 22/84 (26%), Positives = 41/84 (48%)
Frame = +2
Query: 272 SSSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETVAT 451
SSS + ++ +S S +S+ T LSS+ T ++SS S+ S S + ++
Sbjct: 223 SSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSS 282
Query: 452 YWRTTTSIETSRC*SNFKTKTQGS 523
T+++I +S S+ T T +
Sbjct: 283 PTSTSSTISSSSSSSSSPTSTSST 306
Score = 26.6 bits (56), Expect = 3.9
Identities = 23/86 (26%), Positives = 44/86 (51%)
Frame = +2
Query: 266 ASSSSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETV 445
+SSSS + +IS +S S PT T +SS+ + TS+ ST+++S S +
Sbjct: 264 SSSSSSSSIISSSSSSSSSPTS-------TSSTISSSSSSSSSPTSTSSTISSSSSSSSS 316
Query: 446 ATYWRTTTSIETSRC*SNFKTKTQGS 523
+ +++S+ +S S+ T + +
Sbjct: 317 FSSTLSSSSMSSSSSFSSSPTSSSST 342
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 625 DVFAFRQXSNRNRCWAHCTGSWVF 696
D+ +F N NR +AH SW+F
Sbjct: 126 DILSFSNVKNHNRFYAHVFLSWLF 149
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 26.6 bits (56), Expect = 3.9
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +1
Query: 208 FAAPSSIKSAPSLGWRATWSFFKQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVVV 387
FA+ ++ S LGW T+SFF + G +L AY P + PSK+R V
Sbjct: 452 FASTTAKTSNAYLGWNCTFSFFSDIMYG-------VLYAYTP------EVFPSKVRGTAV 498
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 304 ILALLRAYRPRSINPLDEVPSKLRAVVV 387
I +L +Y P+ INP +E+P R + +
Sbjct: 9 IYKVLYSYEPQEINPGEEIPENEREISI 36
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -1
Query: 166 RSAESSRTGREM*QL*STSDRPHAAPSHHRISGYGVSSERRSGSLRPDL 20
RS ES +TG Q STS+ P IS +S + SG L P L
Sbjct: 88 RSIESEQTGTLSKQTTSTSEAPQDLKIWKNISN---ASNQNSGKLNPQL 133
>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 385
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -2
Query: 219 WSSEEVRKVGRRVDNAKFVQLSPQELDERCDSCDQLLIDHTQLLLIIAFLVTEFLL 52
WSS E+R + R + KFV E+ D + + QLL I ++ ++ L
Sbjct: 316 WSSREMRAILRGLQGLKFVGADLVEVAPAYDVAEITSLAGAQLLFDIVSMMVKYPL 371
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 5.1
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +2
Query: 254 GQRGASSSSCTPVISLTSWPFS-EPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSP 430
G SSSS + T ++ P + + T C + TV+T+S + + S
Sbjct: 543 GTSALSSSSNEETTTTTQVTYTTSPEETTTTMTTTTCSSRPEETISTVSTTSTVSESGSS 602
Query: 431 SQETVATYWRTTTSIETS 484
S +TY +T S+ TS
Sbjct: 603 SASITSTYPSSTLSMTTS 620
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 433 PGNCRYVLAHDHVDRNFTLLIQLQNE-NPRLLFWKI 537
P + RY+L H+HV++ + +L ++ E P + +K+
Sbjct: 261 PESPRYLLRHNHVEKVYKILSRIHPEAKPAEIAYKV 296
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 6.8
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Frame = +1
Query: 4 PXQESRDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKLIT--AVTSLVQFLRTQLNEFGI 177
P +S+ S V+K N K L +Y ++ SLV++LR +L + +
Sbjct: 538 PFSKSKSHNHHPSSQVEKSTSNSK-GSMLPLDTLYNNKLSFRLDESLVRYLRFELMKTSL 596
Query: 178 INTTPDFTNF---FAAPSSIKSAPSLGWR-ATWSFFKQL 282
+ +PDF F S S + W+ WSF + +
Sbjct: 597 ASLSPDFDCIGLQFVVGVSASSHLASQWKDEVWSFTRSI 635
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 103 VYQKLITAVTSLVQFLRTQLNEFGIINTTPD 195
+Y+ ++TSL+Q +QL+++ +I PD
Sbjct: 222 IYEIFKYSITSLLQIPVSQLSQYSVIFIVPD 252
>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 171 KFVQLSPQELDERCDSCDQLLIDHTQLLLIIAFLVTE 61
K + + + +DER D C + L+ H Q ++TE
Sbjct: 64 KNILILKKRMDERVDHCFETLVQHLQQTYPDICIITE 100
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 9.0
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = -2
Query: 342 DATRSVGSEKGQDVREITGVQLLEEAPRCPPAKRRSGLN*AWSSEEVRKVGRRVDNAKFV 163
DA + + ++ I G + + + + P KRR N A S ++ + R+D K
Sbjct: 6 DALQDAYKKVEREESLILGAKAMVASTKNPEVKRRLESNIAVSENNIKYLRERIDALKVE 65
Query: 162 QLSPQELDERCDS 124
S +E DS
Sbjct: 66 SGSERESQSDKDS 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,029
Number of Sequences: 5004
Number of extensions: 61366
Number of successful extensions: 190
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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