Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0249
(766 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26224| Best HMM Match : VWD (HMM E-Value=0) 40 0.003
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 38 0.007
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 31 1.0
SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07) 30 1.8
SB_32204| Best HMM Match : wnt (HMM E-Value=8.2e-31) 30 2.3
SB_29615| Best HMM Match : OstA (HMM E-Value=6.2) 29 3.1
SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_42638| Best HMM Match : Filament (HMM E-Value=5.5) 28 9.5
SB_58526| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
Length = 736
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 394 QHIFTFDGRHLTFPGNCRYVLAHDHVDRNFTLLIQLQNE 510
+H TFDGRH+ F G C Y LA D + + + +QN+
Sbjct: 222 RHYRTFDGRHIDFIGKCSYTLAQDCIPGSDQFSLHVQND 260
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 397 HIFTFDGRHLTFPGNCRYVL 456
H +FDG+ TF G C+Y+L
Sbjct: 576 HFVSFDGKAFTFGGKCQYLL 595
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 38.3 bits (85), Expect = 0.007
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +1
Query: 328 RPRSINPLDEVPSKLRAVVVNGQHIFTFDGRHLTFPG----NCRYVLAHDHVDRNFTLLI 495
RPR+ P P A++ H+ TFD + FPG C YVLA D D FT++
Sbjct: 1632 RPRNWVP----PFNSTAMIFGKPHVSTFDSLYYRFPGYNKPECTYVLARDVRDNKFTIMS 1687
Query: 496 Q 498
Q
Sbjct: 1688 Q 1688
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +1
Query: 355 EVPSKLRAVVVNGQHIFTFDGRHLTFPGNCRYVLA-HDH----VDRNFTLLIQLQNENPR 519
+ P +V H TFD R + G C YVL+ H H + FT+ I++ ++ R
Sbjct: 843 DTPCSGTCTMVGNSHFTTFDSRSYSMHGQCDYVLSEHCHFSNDTTKQFTIHIKISSDGSR 902
Query: 520 LL 525
L
Sbjct: 903 QL 904
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 397 HIFTFDGRHLTFPGNCRYVLAHD 465
H TFDGR +F G C YV++ D
Sbjct: 33 HYKTFDGRLYSFQGGCNYVMSTD 55
>SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07)
Length = 1033
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 402 LHVRRSPPHLPRKLSLRIGARPRR*KLHAANP 497
L VR+ PP L RKL+ R+ P+R L P
Sbjct: 978 LRVRKDPPPLKRKLAQRVAIPPKRIALGEVTP 1009
>SB_32204| Best HMM Match : wnt (HMM E-Value=8.2e-31)
Length = 731
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = -2
Query: 144 LDERCDSCDQLLIDHTQLLLIIAFLVTEFLLNVGVDRFGQISAF 13
LD D+CDQ+L+++ +IIA + + +N VD F ++ +F
Sbjct: 299 LDFMSDTCDQILLENPNAKIIIAGDINQLNINKDVD-FVRVFSF 341
>SB_29615| Best HMM Match : OstA (HMM E-Value=6.2)
Length = 343
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 144 LDERCDSCDQLLIDHTQLLLIIAFLVTEF 58
LD D CDQ+L+++ +IIA ++EF
Sbjct: 48 LDFMSDKCDQILLENPNAKIIIAVNISEF 76
>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 269 SSSSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRST-VATSPSQETV 445
+S+S TP I+ T + T L+A+T + L+ T + ++++T +AT+PS T
Sbjct: 691 TSTSQTPPIATTP-SLTTQTTLIATT--PSLTTQTTLIATTPSLTTQTTLIATTPSLTTQ 747
Query: 446 ATYWRTTTSIET 481
T TT S+ T
Sbjct: 748 TTLIATTPSLTT 759
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 269 SSSSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRST-VATSPSQETV 445
S+++ TP I+ T+ + T +A+T + L+ T + ++++T +AT+PS T
Sbjct: 677 SATTQTPPIASTTDTSTSQTPPIATT--PSLTTQTTLIATTPSLTTQTTLIATTPSLTTQ 734
Query: 446 ATYWRTTTSIET 481
T TT S+ T
Sbjct: 735 TTLIATTPSLTT 746
>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +2
Query: 359 CRLSSALLL*TVNTSSRSTVATSPSQETVATYWRTTTSIETSR 487
CR ++ T NTSS S V+T+ S TVA RT TS ++R
Sbjct: 135 CRDATVYRFVTYNTSSSSNVSTTRSPVTVA---RTITSQSSNR 174
>SB_42638| Best HMM Match : Filament (HMM E-Value=5.5)
Length = 252
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/61 (22%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Frame = +1
Query: 49 VQKKLRNQK---CDDE-KELRVVYQKL---ITAVTSLVQFLRTQLNEFGIINTTPDFTNF 207
++KKL +K C++E K++R+ ++ + ++ L+ ++ E ++NT ++ +F
Sbjct: 186 MEKKLEEEKLDFCENELKDMRMFLAQMERDLASIRDQTDSLQDEITEIRVLNTAAEYEDF 245
Query: 208 F 210
F
Sbjct: 246 F 246
>SB_58526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/61 (22%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Frame = +1
Query: 49 VQKKLRNQK---CDDE-KELRVVYQKL---ITAVTSLVQFLRTQLNEFGIINTTPDFTNF 207
++KKL +K C++E K++R+ ++ + ++ L+ ++ E ++NT ++ +F
Sbjct: 186 MEKKLEEEKLDFCENELKDMRMFLAQMERDLASIRDQTDSLQDEITEIRVLNTAAEYEDF 245
Query: 208 F 210
F
Sbjct: 246 F 246
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,778,625
Number of Sequences: 59808
Number of extensions: 476882
Number of successful extensions: 1471
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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