Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0249
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   1.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.1  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   9.5  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   9.5  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    21   9.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 276 LEEAPRCPPAKRRSGLN 226
           LE++P CPPA R +  N
Sbjct: 206 LEQSPLCPPAPRLTNSN 222


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = -1

Query: 751 VRNXLSFNVSTPQVLKCAERPMSPYNEPNTDFCCLXDGK 635
           V N  S N    QV KC       Y        CL DGK
Sbjct: 549 VGNLASNNDRIRQVTKCKATNEETYRGGKGALSCLLDGK 587


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = -1

Query: 751 VRNXLSFNVSTPQVLKCAERPMSPYNEPNTDFCCLXDGK 635
           V N  S N    QV KC       Y        CL DGK
Sbjct: 549 VGNLASNNDRIRQVTKCKATNEETYRGGKGALSCLLDGK 587


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = -1

Query: 751 VRNXLSFNVSTPQVLKCAERPMSPYNEPNTDFCCLXDGK 635
           V N  S N    QV KC       Y        CL DGK
Sbjct: 549 VGNLASNNDRIRQVTKCKATNEETYRGGKGALSCLLDGK 587


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 178  INTTPDFTNFFAAPSSIKSA 237
            +N  PD  N +A P+  KSA
Sbjct: 1467 LNHYPDLHNLYAVPTDKKSA 1486


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = +1

Query: 19  RDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKLI 120
           +DL + +H+++Q   +  K  +EK  R + +  +
Sbjct: 49  KDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMFL 82


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = +1

Query: 19  RDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKLI 120
           +DL + +H+++Q   +  K  +EK  R + +  +
Sbjct: 32  KDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMFL 65


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 168 FVQLSPQELDERCDSC 121
           +V   P+ L E CD C
Sbjct: 8   YVSTMPKSLKEPCDGC 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,655
Number of Sequences: 438
Number of extensions: 4473
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)