Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0249
         (766 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /...    32   0.36 
At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /...    29   2.6  
At5g08030.1 68418.m00934 glycerophosphoryl diester phosphodieste...    29   3.4  
At5g14520.1 68418.m01702 pescadillo-related similar to pescadill...    29   4.5  
At1g61850.1 68414.m06979 patatin family protein similar to membr...    29   4.5  
At3g13670.1 68416.m01722 protein kinase family protein contains ...    28   5.9  
At4g13730.1 68417.m02132 RabGAP/TBC domain-containing protein lo...    28   7.8  
At2g40116.1 68415.m04933 phosphoinositide-specific phospholipase...    28   7.8  

>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
           (Alpha-tocopherol associated protein) (TAP) (bTAP)
           (Fragment) (SP:P58875)  {Bos taurus}
          Length = 683

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +1

Query: 178 INTTPDFTNFFAAPSSIKSAPSLGWRATWSFFKQL---YSGDFPDILA 312
           ++ +P+  + F   S  ++AP LG RA W F K+    +  ++P+ +A
Sbjct: 465 LDFSPEAKSSFVFVSDFRNAPGLGQRALWQFIKRAVKQFEDNYPEFVA 512


>At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           SEC14-like protein 2 (Alpha-tocopherol associated
           protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos
           taurus}; similar to GI:807956 from [Saccharomyces
           cerevisiae]; contains Pfam PF00650 : CRAL/TRIO domain;
           contains Pfam PF03765 : CRAL/TRIO, N-terminus
          Length = 573

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 184 TTPDFTNFFAAPSSIKSAPSLGWRATWSFFKQL---YSGDFPDILA 312
           + P+  + F   S  ++AP LG RA W F ++    +  ++P+  A
Sbjct: 359 SNPEAKSSFVFVSDFRNAPGLGKRALWQFIRRAVKQFEDNYPEFAA 404


>At5g08030.1 68418.m00934 glycerophosphoryl diester
           phosphodiesterase family protein similar to
           glycerophosphodiester phosphodiesterase [Borrelia
           hermsii] GI:1399038; contains Pfam profile PF03009:
           Glycerophosphoryl diester phosphodiesterase family
          Length = 372

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 193 DFTNFFAAPSSIKSAPSLGWRATWSFFKQLYSGDFPDI 306
           + T FF    ++K   +LG +  + F  Q Y+G FP I
Sbjct: 120 NMTGFFTVDFTLKELKTLGAKQRYPFRDQQYNGKFPII 157


>At5g14520.1 68418.m01702 pescadillo-related similar to pescadillo
           [Zebrafish, Danio rerio] SWISS-PROT:P79741
          Length = 590

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 510 FVLKLD*QREVSIDVVVRQYVATVSWEGEVATVEREDVLTVHN 382
           F L  +  RE S+ +V+  +   VSWEGE A  + +D    H+
Sbjct: 342 FFLSREVPRE-SLQLVITAFGGMVSWEGEGAPFKEDDESITHH 383


>At1g61850.1 68414.m06979 patatin family protein similar to
           membrane-associated calcium-independent phospholipase A2
           gamma; IPLA2 gamma [Homo sapiens] GI:8453174; contains
           Patatin domain PF01734, PF00514:
           Armadillo/beta-catenin-like repeat
          Length = 1265

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 181 NTTPDFTNFFAAPSSIKSAPSLGWRATWSFFKQLYSGD 294
           N  P F N     S ++S+PSLGWR      +  +S D
Sbjct: 829 NLKPRFMNGKLPNSRVESSPSLGWRRNVLLMEAQHSPD 866


>At3g13670.1 68416.m01722 protein kinase family protein contains
           Pfam domains, PF00069: Protein kinase domain
          Length = 703

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 388 NGQHIFTFDGRHLTFPGNCRYVLAHDHVDRNFTLLIQLQNENPRLLF 528
           +GQH+  +D R   F G  RY  AH H+ R  +    L++    L+F
Sbjct: 302 SGQHV-EYDQRPDMFRGTVRYASAHAHLGRTASRRDDLESLAYTLIF 347


>At4g13730.1 68417.m02132 RabGAP/TBC domain-containing protein low
           similarity to SP|Q08484 GTPase-activating protein GYP1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00566: TBC domain
          Length = 449

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 274 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLR 375
           ++L +GDF   L LL+ Y P +I+ +  V  KLR
Sbjct: 414 RRLLAGDFTSNLKLLQNYPPTNISHMLYVADKLR 447


>At2g40116.1 68415.m04933 phosphoinositide-specific phospholipase C
           family protein contains Pfam profile: PF00388
           phosphatidylinositol-specific phospholipase C
          Length = 613

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 183 VDNAKFVQLSPQELDERCDSCDQLLIDHTQLLLI 82
           VD  + + LS QELD  C S  Q ++  TQ  L+
Sbjct: 371 VDKVRRLSLSEQELDRTCSSNSQDVVRFTQRNLL 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,940,397
Number of Sequences: 28952
Number of extensions: 327489
Number of successful extensions: 924
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)