Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0248
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58727-2|AAB00582.2|  462|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U41548-2|AAA83204.1|  399|Caenorhabditis elegans Hypothetical pr...    29   3.4  

>U58727-2|AAB00582.2|  462|Caenorhabditis elegans Hypothetical
           protein D1005.2 protein.
          Length = 462

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -2

Query: 717 KLYQILVN*NINFRMSQKSKINVDIKWGLLLQQDQKMMYL 598
           ++ Q++++ N+++ M    K  VD+K G L+    +MM+L
Sbjct: 228 QIVQLMLDKNVDYIMECTPKTQVDVKGGTLIDIGGRMMHL 267


>U41548-2|AAA83204.1|  399|Caenorhabditis elegans Hypothetical
           protein M02F4.1 protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -1

Query: 682 LQDVPKIQNKCGYKMGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVXPTAHQI 503
           L+ V  ++   G + GSP    +KND   F+ + N ++     G   N +N    TAH I
Sbjct: 332 LKQVGVVEVYPGIQQGSPHVLCAKNDDHCFKKIQNTILVTEAIGKIFNREN----TAHSI 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,398,510
Number of Sequences: 27780
Number of extensions: 243343
Number of successful extensions: 575
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)