Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0247
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 86 2e-17
10_08_0415 - 17761594-17762382 30 1.7
05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111... 29 3.0
02_05_0694 - 30984408-30985160,30985357-30985487,30985586-30985853 28 7.0
11_04_0247 + 15313008-15313137,15313226-15313959,15314038-153141... 28 9.3
09_04_0652 - 19227686-19227926,19229368-19232294 28 9.3
08_01_0621 - 5426210-5427787 28 9.3
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076... 28 9.3
03_01_0112 + 902459-902770,903275-903280 28 9.3
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 86.2 bits (204), Expect = 2e-17
Identities = 42/73 (57%), Positives = 51/73 (69%)
Frame = +2
Query: 14 ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVK 193
AL+S+SDKT L L L G +I++GGTA++L AG+ V V IT PEML GRVK
Sbjct: 48 ALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGRVK 107
Query: 194 TLHPAVHAGILAR 232
TLHP+VH GILAR
Sbjct: 108 TLHPSVHGGILAR 120
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1
Query: 292 VCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 396
V NLYPF V+ ++ D +ENIDIGG T++RA
Sbjct: 142 VVNLYPFYNKVTSGVISFEDGIENIDIGGPTMIRA 176
Score = 35.9 bits (79), Expect = 0.035
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 21/77 (27%)
Frame = +2
Query: 476 QTSSDDFGHKARLALKAFTHTSDYDLAISDYFRKQYS---------------------PG 592
Q DD + LA KAF H + YD A+S++ KQ + P
Sbjct: 201 QGKQDDQQFRKMLAWKAFQHVASYDSAVSEWLWKQSNKDIITLSCSHVGDVFPPNFTVPL 260
Query: 593 QAQLTLRYGMNPHQKPA 643
+ TLRYG NPHQK A
Sbjct: 261 SLKSTLRYGENPHQKAA 277
>10_08_0415 - 17761594-17762382
Length = 262
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 97 WRYRHGASERRPHSSRCVGHHESTGDARRSGENFTSSGTCWDLSSIIR 240
WRY+ A R +S C G + + GE + +G C D++ I+R
Sbjct: 121 WRYKGVA---RQSASMCCGQLDHSSGMHDDGEVWLRAGPCSDIAGIVR 165
>05_05_0075 +
22209322-22210041,22210323-22210391,22210775-22211145,
22212291-22212351,22212496-22213086
Length = 603
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Frame = +1
Query: 64 PVGMWPAVDCQWRYRHGASERRPHS-----SRCVGHHESTGDARRSGENFTSSGTCWDLS 228
P G WP + Y +S PHS ++ V H G A G S LS
Sbjct: 63 PPGSWPLPPAFYSYASSSSSYSPHSPTLAHAQLVAHGMPPGAATSGGAQIPSQNFALSLS 122
Query: 229 SIIRL*PGSMKRQ 267
S P + +RQ
Sbjct: 123 SASSNPPPTPRRQ 135
>02_05_0694 - 30984408-30985160,30985357-30985487,30985586-30985853
Length = 383
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 563 DYFRKQYSPGQAQLTLRYGMN-PHQKPAQVFT 655
D QY PG + L L YG++ PH +P F+
Sbjct: 49 DVGNNQYLPGNSPLQLPYGIDFPHSRPTGRFS 80
>11_04_0247 +
15313008-15313137,15313226-15313959,15314038-15314169,
15314179-15314499,15314581-15314888,15315007-15315411,
15315494-15315664,15315744-15316002,15316443-15316481,
15317619-15317750
Length = 876
Score = 27.9 bits (59), Expect = 9.3
Identities = 7/18 (38%), Positives = 16/18 (88%)
Frame = +1
Query: 484 IRRLWAQGKISPEGVHSY 537
+++LWA +++P+G+HS+
Sbjct: 833 LQQLWATAEVNPQGIHSH 850
>09_04_0652 - 19227686-19227926,19229368-19232294
Length = 1055
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 118 SERRPHSSRCVGHHESTGDARRSGENFTSSGTCW 219
SE+ P S C S + ++G + GTCW
Sbjct: 447 SEKEPEPSECSESCASVPNLEQTGTSNVEDGTCW 480
>08_01_0621 - 5426210-5427787
Length = 525
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 455 YSIVVGRVTDDGDPVVVLGXARRRVTPP 372
YS+ GR+ DDGD + + RR V+ P
Sbjct: 140 YSLAEGRMCDDGDVRLPMACRRRYVSSP 167
>04_04_1677 +
35306232-35306328,35306697-35307248,35307324-35307608,
35308035-35308296,35308378-35308430,35308520-35308587,
35310331-35310420,35310502-35310586,35310822-35311254,
35312872-35313439,35313527-35314000
Length = 988
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/78 (28%), Positives = 28/78 (35%)
Frame = +1
Query: 4 WXTSSSQRFRQDGSTLVSKEPVGMWPAVDCQWRYRHGASERRPHSSRCVGHHESTGDARR 183
+ S R DG + V PA+ RH R SSR GH + GD
Sbjct: 703 YYVQSPSRDSHDGEKTATS--VHSTPALSPMGSPRHSVG-RDSSSSRFSGHPKRKGDKSS 759
Query: 184 SGENFTSSGTCWDLSSII 237
SG +G W +I
Sbjct: 760 SGRKGAPAGKGWQEIGVI 777
>03_01_0112 + 902459-902770,903275-903280
Length = 105
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 184 TSEHLRCSRDVRHILNCEAGVPK 116
T+ LR RD RH+ CE+GVPK
Sbjct: 58 TATRLRL-RDGRHLAYCESGVPK 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,344,967
Number of Sequences: 37544
Number of extensions: 396959
Number of successful extensions: 1256
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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