Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0247
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)             120   1e-27
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)                      65   5e-11
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                31   0.77 
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)                30   2.3  
SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)                 29   5.4  
SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_32173| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-34)                 28   7.2  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score =  120 bits (289), Expect = 1e-27
 Identities = 57/82 (69%), Positives = 69/82 (84%)
 Frame = +2

Query: 5   GXLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGG 184
           G LALLSVS+K GL+  AK L + G +L+ASGGTA A+RNAG+ V+DVS+IT APEMLGG
Sbjct: 33  GSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTANAIRNAGIPVRDVSEITGAPEMLGG 92

Query: 185 RVKTLHPAVHAGILARLSDSDQ 250
           RVKTLHPAVH GILAR+S+ D+
Sbjct: 93  RVKTLHPAVHGGILARVSEGDK 114



 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 36/55 (65%), Positives = 44/55 (80%)
 Frame = +2

Query: 512 LALKAFTHTSDYDLAISDYFRKQYSPGQAQLTLRYGMNPHQKPAQVFTTRDSLPI 676
           LALKAF+HT+ YD+AISDYFRK+YS   + + LRYGMNPHQKPAQ+ T    LP+
Sbjct: 203 LALKAFSHTASYDMAISDYFRKEYSENVSHIPLRYGMNPHQKPAQLMTMEPELPV 257



 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 31/47 (65%), Positives = 36/47 (76%)
 Frame = +1

Query: 256 MKRQKYEXISXXVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 396
           M +Q +E I   VCNLYPFV TV+K  V V++AVE IDIGGVTLLRA
Sbjct: 117 MAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 163



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 20/36 (55%), Positives = 26/36 (72%)
 Frame = +3

Query: 402 KNHDRVTVVCDPADYDAVVKEIKENKHHQTTLGTRQ 509
           KNH+RVTVVCDP DY+ V+ E+ EN+   T   TR+
Sbjct: 166 KNHERVTVVCDPEDYNKVLSEMTENETCDTLPDTRK 201


>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
          Length = 79

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 31/47 (65%), Positives = 36/47 (76%)
 Frame = +1

Query: 256 MKRQKYEXISXXVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 396
           M +Q +E I   VCNLYPFV TV+K  V V++AVE IDIGGVTLLRA
Sbjct: 14  MAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 60



 Score = 35.5 bits (78), Expect = 0.047
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +3

Query: 402 KNHDRVTVVCDPADYD 449
           KNH+RVTVVCDP DY+
Sbjct: 63  KNHERVTVVCDPEDYN 78


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 452  CSQRNQREQTSSDDFGHKARLALKAFTHTSDYDLAISDYFRKQYSPGQ 595
            C++RN R Q    D G +  + L +     DYD  ++ YF K  + G+
Sbjct: 3714 CARRNNRNQWIQVDLGRRHIVTLISTQGRQDYDQWVTSYFVKYSNDGR 3761


>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
          Length = 1706

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 411  DRVTVVCDPADYDAVVKEIKE-NKHHQTTL 497
            D +   CDPA+ +A++  I+E N+HHQ  L
Sbjct: 1447 DGILRTCDPAELEALLMLIEEQNEHHQKVL 1476


>SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1194

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 155 CPTHLEL*GRRSEAPWRYRHWQSTAGHIPTGSLLTRVDPSCLK 27
           CP  + +   R+ +   Y  W+       TG+L+TR++PS +K
Sbjct: 447 CPNDITITTARNNSKAAYVTWKPPQAVDNTGNLVTRIEPSEIK 489


>SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)
          Length = 714

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
 Frame = +1

Query: 343 VADAVENIDIGGVTLLRAXPRT--TTGSPSSVTR---PTTML*SKKSK---RTNIIRRLW 498
           +A AV N+ +   T LR  P T  TTGSPS VTR   P  ++ S  S+    + ++R + 
Sbjct: 246 IAPAVTNL-VTLSTALRVLPSTSATTGSPSFVTRQGVPVRIVTSSGSQVATSSGVVRAVT 304

Query: 499 AQGKI 513
             GK+
Sbjct: 305 PSGKV 309


>SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 361 NIDIGGVTLLRAXPRTTTGSPSSVTRPTTML*SKKSKRTNIIRRL 495
           N D+      +  P      PSS TR T    +KK  R+N+++++
Sbjct: 377 NWDLNPTDHTQFVPSKAAAKPSSPTRTTQQYHTKKGHRSNVVQKV 421


>SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 470 FDFFDYSIVVGRVTDDGDPVVVL 402
           FDF D+SI+V ++T    PVV++
Sbjct: 294 FDFIDHSILVDKLTYQARPVVIV 316


>SB_32173| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-34)
          Length = 375

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 627 HIRSRPRYSRPETACRFTTLKRCAWILSXLCEALKRLAVRSXE 755
           H   RP + R  + C F TL    WI S L  AL  +   S +
Sbjct: 135 HAILRPLHHRTLSQCAFRTLISIPWIFSALIAALHPIQYHSWQ 177


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 316  QTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTRPTT 447
            +T   P+ T        +I GV+   A P TT+G P + T P T
Sbjct: 2571 ETTFVPETTAVPETTGSEITGVSETTAVPETTSG-PMTTTGPET 2613


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,901,090
Number of Sequences: 59808
Number of extensions: 452813
Number of successful extensions: 1340
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)