Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0247
         (758 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY146759-1|AAO12074.1|  356|Anopheles gambiae odorant-binding pr...    25   1.9  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    24   5.9  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    23   7.7  

>AY146759-1|AAO12074.1|  356|Anopheles gambiae odorant-binding
           protein AgamOBP45 protein.
          Length = 356

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 23/94 (24%), Positives = 38/94 (40%)
 Frame = -3

Query: 285 AYXLVLLTFHASWSESDNRAKIPACTAGCKVFTRPPSISGALVMSDTS*TVRPAFRSAVA 106
           AY  VL     ++ E D      A    C+V   PP+++     + T+ T   A  S   
Sbjct: 258 AYRDVLGELGRAYYEYDVLQAAAAKMTVCEVAVEPPAMTTTTTTTTTTPTTATACPSTTE 317

Query: 105 VPPLAINCRPHSDRLFANESRPVLSETLRRASXP 4
                +NC+ +  RLF + +  V      ++S P
Sbjct: 318 FNYKELNCQ-NCGRLFISNNGRVSCCRCMKSSTP 350


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 138 TVRPAFRSAVAVPPLAINCRPHSDRLFANESRPVLSETLRRA 13
           T RPA+    A+  L   CR    R  A+ + P +S   R+A
Sbjct: 290 TGRPAYWCTPAIEELENECRIAEQRQLASPTDPDISALDRQA 331


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
 Frame = +3

Query: 90  LPVAVPPRRFGTPASQ-----FKMCRTSREHRRCSEV 185
           L V +PP      A+Q      K CR +++  RCSE+
Sbjct: 163 LSVRLPPEDGAECATQPCSALLKACRYAKQPERCSEI 199


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 717,030
Number of Sequences: 2352
Number of extensions: 14513
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78586767
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)