Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0247
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical pr...   113   1e-25
U58747-2|AAQ91905.1|  393|Caenorhabditis elegans Hypothetical pr...    54   8e-08
U64861-1|AAB04993.1|  158|Caenorhabditis elegans Cytidine deamin...    29   3.6  

>U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical
           protein C55F2.1b protein.
          Length = 594

 Score =  113 bits (273), Expect = 1e-25
 Identities = 54/81 (66%), Positives = 67/81 (82%)
 Frame = +2

Query: 11  LALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRV 190
           LA++SVSDKTGL+ LA  L   GL LIASGGTA A+R+ G+ V DV+D+T+ PEMLGGRV
Sbjct: 7   LAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVTKFPEMLGGRV 66

Query: 191 KTLHPAVHAGILARLSDSDQE 253
           KTLHPAVH GILAR ++SD++
Sbjct: 67  KTLHPAVHGGILARDTESDRK 87



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 27/47 (57%), Positives = 34/47 (72%)
 Frame = +1

Query: 256 MKRQKYEXISXXVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 396
           +++     +S  VCNLYPF +TV   D +V +AVENIDIGGVTLLRA
Sbjct: 89  LEKHNISFVSVVVCNLYPFKKTVQSKDCSVEEAVENIDIGGVTLLRA 135



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
 Frame = +2

Query: 512 LALKAFTHTSDYDLAISDYFRKQYS-PGQAQLTLRYGMNPHQK-PAQVFTTRDSLPI 676
           LALKAF HT+ YD +IS + R++++  G+  L LRYG NPHQK  A+++   D +PI
Sbjct: 172 LALKAFEHTTSYDESISGFMRRRFAGNGERALPLRYGTNPHQKDDAELYIVEDEMPI 228



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 15/23 (65%), Positives = 21/23 (91%)
 Frame = +3

Query: 402 KNHDRVTVVCDPADYDAVVKEIK 470
           KNH+RV+V+CDPADYD ++ E+K
Sbjct: 138 KNHERVSVICDPADYDHIISELK 160


>U58747-2|AAQ91905.1|  393|Caenorhabditis elegans Hypothetical
           protein C55F2.1c protein.
          Length = 393

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
 Frame = +2

Query: 521 KAFTHTSDYDLAISDYFRKQYS-PGQAQLTLRYGMNPHQK-PAQVFTTRDSLPI 676
           KAF HT+ YD +IS + R++++  G+  L LRYG NPHQK  A+++   D +PI
Sbjct: 45  KAFEHTTSYDESISGFMRRRFAGNGERALPLRYGTNPHQKDDAELYIVEDEMPI 98


>U64861-1|AAB04993.1|  158|Caenorhabditis elegans Cytidine deaminase
           protein 1 protein.
          Length = 158

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 554 RGHSP-KYE*TPSGLILPCAQSRLMMFVLFDFFDYSIVVGRVTDD 423
           +GH   KY    + L  PC+   +   VL +F DY +++G  T D
Sbjct: 74  KGHRKFKYIVVATELEAPCSPCGVCRQVLIEFGDYKVILGSSTSD 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,656,563
Number of Sequences: 27780
Number of extensions: 311800
Number of successful extensions: 914
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)