Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0247
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...    88   7e-18
At1g64410.1 68414.m07301 hypothetical protein                          31   1.1  
At1g52960.1 68414.m05990 hypothetical protein very low similarit...    31   1.1  
At2g28960.1 68415.m03523 leucine-rich repeat protein kinase, put...    28   7.7  
At1g31350.1 68414.m03836 F-box family protein similar to hypothe...    28   7.7  

>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score = 87.8 bits (208), Expect = 7e-18
 Identities = 41/73 (56%), Positives = 52/73 (71%)
 Frame = +2

Query: 14  ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVK 193
           AL+S+SDK  L SL   L E G  ++++GGTA+ L NAG++V  V  +T  PEML GRVK
Sbjct: 74  ALISLSDKRDLASLGNGLQELGYTIVSTGGTASTLENAGVSVTKVEKLTHFPEMLDGRVK 133

Query: 194 TLHPAVHAGILAR 232
           TLHP +H GILAR
Sbjct: 134 TLHPNIHGGILAR 146



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +1

Query: 292 VCNLYPFVQTVSKPD-VTVADAVENIDIGGVTLLRA 396
           V NLYPF + V+ P  ++  D +ENIDIGG  ++RA
Sbjct: 168 VVNLYPFYEKVTAPGGISFEDGIENIDIGGPAMIRA 203



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
 Frame = +2

Query: 503 KARLALKAFTHTSDYDLAISDYFRKQYS-----------PGQAQLTLRYGMNPHQKPA 643
           + +LA KAF H + YD A+S++  KQ             P   + +LRYG NPHQK A
Sbjct: 237 RRKLAWKAFQHVAAYDSAVSEWLWKQTEGKEKFPPSFTVPLVLKSSLRYGENPHQKAA 294



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 402 KNHDRVTVVCDPADYDAVVKEIKENKHHQ 488
           KNH  V +V D  DY AV++ +K  +  Q
Sbjct: 206 KNHKDVLIVVDSGDYQAVLEYLKGGQSDQ 234


>At1g64410.1 68414.m07301 hypothetical protein
          Length = 1231

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 402 KNHDRVTVVCDPADYDAVVKEIKENKHH 485
           K HDRVTV  +P D D   KE  E K +
Sbjct: 582 KGHDRVTVTVEPNDQDTAKKEKDEVKDY 609


>At1g52960.1 68414.m05990 hypothetical protein very low similarity
           to SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 996

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 402 KNHDRVTVVCDPADYDAVVKEIKENKHH 485
           K HDRVTV  +P D D   KE  E K +
Sbjct: 208 KGHDRVTVTVEPNDQDTAKKEKDEVKDY 235


>At2g28960.1 68415.m03523 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 880

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 500 HKARLALKAFTHTSDYDLAIS-DYFRKQYSPGQAQLTLRYGMNPHQ 634
           H A +       T ++D+ +  D  +  YSP   Q   +Y ++PH+
Sbjct: 277 HFAEIQALRGNETREFDIELEEDIIQSAYSPTMLQSDTKYNLSPHK 322


>At1g31350.1 68414.m03836 F-box family protein similar to
           hypothetical protein GB:AAF24593 GI:6692128 from
           [Arabidopsis thaliana] ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 395

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 704 NPSAPFQCRESASCLWS*IPGPASDVGSYRIL 609
           NPS  F C    S  W  +P P  D   +RIL
Sbjct: 94  NPSVRFMCFNPVSSKWYPLPPPPPDPPLHRIL 125


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,869,736
Number of Sequences: 28952
Number of extensions: 294909
Number of successful extensions: 836
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)