Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0246
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 38 0.002
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ... 30 0.31
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 28 1.6
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 2.9
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 3.8
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 26 6.6
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 26 6.6
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 25 8.7
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 25 8.7
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 37.5 bits (83), Expect = 0.002
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 20/129 (15%)
Frame = +1
Query: 97 RACIIGAGYSGLGAARYM--KQYHVNFTVFEATRNFGGTWHF-------------DPHVG 231
+ IIGAG SGL A+ + ++ T+FE + GG W++ +P +
Sbjct: 8 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILT 67
Query: 232 TDED-GLASF----SSMYNDLRTNTPRQTMEYYDFPFPEGTPSYPSATCFLDYLKSFVKH 396
T+ G A+ S +Y DL+TNTP + M Y D F T +P +Y + + +
Sbjct: 68 TEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQ- 126
Query: 397 FDLLSHIQL 423
LL I+L
Sbjct: 127 -PLLPFIKL 134
>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 30.3 bits (65), Expect = 0.31
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 143 AI*NSITSTSQFSKRLETSAALGILILTLVQMKTAWPAFLAC 268
A+ +S+ +++ RLETSA LG L ++V + W + AC
Sbjct: 167 ALAHSVVLHKKYASRLETSARLGFL-WSIVYLHVIWFLYYAC 207
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 106 IIGAGYSGLGAARYMKQYHVNFTVFEATRNFGGT 207
+IG G GL +AR ++ + EA+ GGT
Sbjct: 12 VIGGGSGGLASARRAAKHGAKVALIEASGRLGGT 45
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 294 TSNHGILRLSISRGNPVVSIGNVLPRLLKIICEAFRFTQSYSIAXLVTS 440
T+N +LR NP I ++P LLK + + R+T A L TS
Sbjct: 1541 TANKSLLRFGDVISNP--EIQTLVPTLLKALSDCTRYTDDALEALLKTS 1587
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 712 RSRWTTVSRDPKPEAPAPTI 653
RSRW+ +S P P P P +
Sbjct: 360 RSRWSNISYSPPPPPPPPEL 379
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 103 CIIGAGYSGLGAARYMKQ 156
CI+GAG +GL AA +KQ
Sbjct: 94 CIVGAGPAGLSAAIRIKQ 111
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Frame = -2
Query: 632 RPSDLCNHDCGSC-----CLQMFLFRRTWATQEY 546
RP+ NH G+ CL +F F +TWA Y
Sbjct: 357 RPNGTSNHRAGAVMIVFSCLFIFSFAQTWAPAAY 390
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 554 QEYYKGHLLPQ*SRTFSYIFLGV-RLCVSKVPVIARPL 444
+ + K HL Q S YIFLG+ +C+ + I+ PL
Sbjct: 704 KSFLKDHLTEQLSYDLWYIFLGLFIICICEGGKISNPL 741
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 89 KLRERASSALDIQVWVQPAI*NSITSTSQFSK 184
+L E + L Q W+QP I +I T+ F K
Sbjct: 166 ELIELTNKDLGFQEWIQPMIQGNIAITNSFLK 197
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,313,399
Number of Sequences: 5004
Number of extensions: 72473
Number of successful extensions: 216
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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