Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0246
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37338| Best HMM Match : FMO-like (HMM E-Value=2.1e-21)              93   2e-19
SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   2e-10
SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)                    63   3e-10
SB_3584| Best HMM Match : No HMM Matches (HMM E-Value=.)               52   7e-07
SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)     37   0.015
SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.061
SB_28591| Best HMM Match : PAN (HMM E-Value=0.0019)                    33   0.33 
SB_53155| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.57 
SB_47558| Best HMM Match : Abhydrolase_1 (HMM E-Value=1.8)             31   0.76 
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)                   29   3.0  
SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31)                   29   3.0  
SB_27890| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)                   28   7.0  
SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)               28   9.3  
SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_37338| Best HMM Match : FMO-like (HMM E-Value=2.1e-21)
          Length = 433

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 45/110 (40%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
 Frame = +1

Query: 97  RACIIGAGYSGLGAARYMKQYHVNF--TVFEATRNFGGTWHFDPHVGTDEDGLASFSSMY 270
           R  +IGAG +GL   R+       F  TVFE T   GGTW ++   G DE+GL   SSMY
Sbjct: 3   RVAVIGAGAAGLCVGRHFLARSDVFQATVFEQTNRVGGTWVYNARTGVDENGLPVHSSMY 62

Query: 271 NDLRTNTPRQTMEYYDFPFPEGTPSYPSATCFLDYLKSFVKHFDLLSHIQ 420
           ++L+TN P++ M + D+PFPE   SY + +    YL+ + +HF +LS ++
Sbjct: 63  HNLKTNLPKEVMLFPDYPFPENLKSYLTHSEVCKYLEDYAEHFGVLSIVE 112



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = +2

Query: 410 VIFNCAXGHIS-----EVGGQSLEPYLHKDGHQGKCN*TCDFIVVANGPYNTPVWPKYDG 574
           V FN    HI+     +V     E  +       K   T D +VV  G Y+ P  P+  G
Sbjct: 111 VEFNTTVEHIAPLNEDDVNNPRWEVTIRNLNSNKKSTSTFDAVVVCTGHYSVPRKPEIPG 170

Query: 575 IETFEGNMIHSHDYK 619
           +  F G ++HSHDY+
Sbjct: 171 LSEFPGLVMHSHDYR 185


>SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 33/104 (31%), Positives = 53/104 (50%)
 Frame = +1

Query: 106 IIGAGYSGLGAARYMKQYHVNFTVFEATRNFGGTWHFDPHVGTDEDGLASFSSMYNDLRT 285
           +IGAG SGL  A+ +     +  V+E + + GG W F      D  G+  F+ +      
Sbjct: 15  VIGAGISGLATAKCLLDDKFSIIVYEQSDHIGGLWQFQE----DGYGVMRFTHI------ 64

Query: 286 NTPRQTMEYYDFPFPEGTPSYPSATCFLDYLKSFVKHFDLLSHI 417
           N  +    + D+PFP+ TP +P     + Y+ ++ KHF+LL HI
Sbjct: 65  NVSKHNYCFSDYPFPDETPDFPHHLHMMQYVHNYAKHFNLLRHI 108



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 518 FIVVANGPYNTPVWPKYDGIETFEGNMIHSHDYKD 622
           ++ +A G + TP+ P + G   F+G +IHS  YKD
Sbjct: 145 YVAIATGHHATPIHPSFPGQSNFKGEIIHSVSYKD 179


>SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)
          Length = 475

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 34/110 (30%), Positives = 52/110 (47%)
 Frame = +1

Query: 97  RACIIGAGYSGLGAARYMKQYHVNFTVFEATRNFGGTWHFDPHVGTDEDGLASFSSMYND 276
           +  IIG+G SGL + +      +    FE   + GG WHF P            SS+Y  
Sbjct: 2   KVAIIGSGASGLVSMKSCIDEGIEPVCFEQEDSIGGLWHFTPE--------ERHSSVYRS 53

Query: 277 LRTNTPRQTMEYYDFPFPEGTPSYPSATCFLDYLKSFVKHFDLLSHIQLR 426
           +  NT ++ M + DFP P+  P +   +  + Y   F +HFDL  +I+ R
Sbjct: 54  IVINTSKEMMCFSDFPIPKDYPPFMHHSYVMKYFHLFARHFDLYKYIRYR 103



 Score = 38.3 bits (85), Expect = 0.007
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = +2

Query: 521 IVVANGPYNTPVWPKYDGIETFEGNMIHSHDYKDRKGVQKQK----GAYSRSWSFRLGIS 688
           ++V  G ++ P WP +  +  F G  +HSH YKD +G + +     G  +      + +S
Sbjct: 142 VMVCVGHHSKPYWPVFPAMHKFCGVKMHSHAYKDFRGFEGKTVVVIGVGNSGGDIAVELS 201

Query: 689 RYSC 700
           R++C
Sbjct: 202 RHNC 205


>SB_3584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 470

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 32/108 (29%), Positives = 52/108 (48%)
 Frame = +1

Query: 97  RACIIGAGYSGLGAARYMKQYHVNFTVFEATRNFGGTWHFDPHVGTDEDGLASFSSMYND 276
           +  IIGAG SGL + +      +  T +E     GG W+F       E   A+  ++   
Sbjct: 4   KVAIIGAGASGLCSIKEALDAGLEPTAYEKASWLGGIWNFSED---PEQSCAALCTI--- 57

Query: 277 LRTNTPRQTMEYYDFPFPEGTPSYPSATCFLDYLKSFVKHFDLLSHIQ 420
             TNT +  M + DFP  +  P+Y     +  YL+S+ K F+L+ +I+
Sbjct: 58  --TNTSKHVMCFSDFPMSKTCPNYLPMKTYQAYLESYAKEFNLVKNIR 103



 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 17/44 (38%), Positives = 30/44 (68%)
 Frame = +2

Query: 515 DFIVVANGPYNTPVWPKYDGIETFEGNMIHSHDYKDRKGVQKQK 646
           DF++VA+G  + P  P+  G+E+F G +IHS +YK  +G + ++
Sbjct: 141 DFVMVASGKLSEPFIPEIPGMESFPGKLIHSKEYKTFRGFENRR 184


>SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)
          Length = 1021

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +1

Query: 28  LPGPHADQCALSVH*VAGRQK----TSRACIIGAGYSGLGAARYMKQYHVNFTVFEATRN 195
           L GP A  CAL    V  +Q+    T++  I+GAG +G+ AA  + +  V F V EA   
Sbjct: 14  LRGPLAVLCALEDTTVNAQQQHQVYTTKVLILGAGVAGIAAASVLHEEGVGFIVLEAKDY 73

Query: 196 FGG 204
            GG
Sbjct: 74  IGG 76


>SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 35.1 bits (77), Expect = 0.061
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = +1

Query: 85  QKTSRACIIGAGYSGLGAARYMKQYHVNFTVFEATRNFGG 204
           +K+ +  I+G+G +GL AAR ++ + ++ T+ EA    GG
Sbjct: 248 KKSPKVIIVGSGIAGLMAARQLQSFGIDVTMVEARERVGG 287


>SB_28591| Best HMM Match : PAN (HMM E-Value=0.0019)
          Length = 238

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 33  RSSCGSVCTLSSLSCRPTKNFE-SVHHRRWIFRFGCSPL 146
           R   GS   L +LSCR  K+FE +V  R WI+ FG SP+
Sbjct: 71  RIPIGSSLQLPALSCREIKDFEHAVSGRYWIWEFG-SPV 108


>SB_53155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -3

Query: 703 WTTVSRDPKPEAPAPTISTFLFLYALPIFVI 611
           WT   +D    + A TI+TFL LY LP+ VI
Sbjct: 188 WTPAFKDTIGSSRAYTITTFLLLYLLPLCVI 218


>SB_47558| Best HMM Match : Abhydrolase_1 (HMM E-Value=1.8)
          Length = 299

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 527 VANGPYNTPVWPKYDG-IETFEGNMIHSHDYKDRKGVQKQKGAY 655
           + N P  T V   Y G I   EG MIH  +Y DR   Q  KG +
Sbjct: 227 IGNNPMFTLVLTAYGGHIGFIEGVMIHEQNYMDRVFAQFAKGVF 270


>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2324

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +1

Query: 106  IIGAGYSGLGAARYM--KQYHVNFTVFEATRNF-GGTW-HFDPHVGTDEDG 246
            IIGAG SGL AA  +  +  ++   V EA  +  GGT+   DP  G D +G
Sbjct: 2111 IIGAGVSGLIAANVLTEQDQYIKVLVLEACDHVGGGTYTESDPKCGVDYEG 2161


>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
          Length = 2160

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 30   SRSSCGSVCTLSSLSCRPTKNFESVHHRRWIFRFG-CSPLYETVSRQL 170
            SRS  G+ C ++S   +   +    HH R IF +G  SPL   V  ++
Sbjct: 1057 SRSVYGNSCQIASWEIKMADSLSDFHHNRLIFFYGFFSPLCIQVKERI 1104


>SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31)
          Length = 836

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 106 IIGAGYSGLGAARYMKQYH-VNFTVFEATRNFGG 204
           +IG G SGL AA+ ++Q H V+  V EA    GG
Sbjct: 552 VIGGGISGLCAAKLLQQGHGVDTLVLEARDRVGG 585


>SB_27890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -3

Query: 658 TISTFLFLYALPIFVIMTV-DHVAFKCFYSVVLGPHRSIIRAI 533
           TI +F+ LYALP+ +I+ +   + +K ++  + G   S IR +
Sbjct: 358 TIVSFVALYALPLTIIIALYSTIVYKMWFRKIPGNSHSSIREL 400


>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
          Length = 958

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 277 LRTNTPRQTMEYYDFPFPEGTPSYPSATCFLDYL 378
           LR +TP  T+ Y+  P P  TP Y S    L YL
Sbjct: 782 LRYSTPSNTLLYFAIPHPR-TPHYTSLFRTLKYL 814


>SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 704

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 551 PVWPKYDGIETFEGNMIHSHDYKDRKGVQKQK 646
           PV  K DG++  E N + + D  +RKG ++++
Sbjct: 604 PVTIKIDGVDDIENNNLENVDNSNRKGREREE 635


>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 1354

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 739 PSGGCELIWRSRWTTVSRDPKPEAPAP 659
           P+G  E + R+R ++ S+  KPE PAP
Sbjct: 765 PAGDIESLDRTRSSSESKKEKPERPAP 791


>SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 677

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
 Frame = +3

Query: 21  VVPSRSSCGSVCTLSSLSCRPTKNFESVHHRRWIFRFGCSPL--YETVSRQLHSFR 182
           + P R  C  +   S   C P  +F  + H    FR  C PL  +  +   L  FR
Sbjct: 114 LAPFRQMCHPLAPFSRQMCHPLAHFRQMCHPLAPFRQMCHPLAPFRQICNPLAHFR 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,390,423
Number of Sequences: 59808
Number of extensions: 580178
Number of successful extensions: 1359
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)