Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0246
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   3.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   4.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   7.1  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 97  RACIIGAGYSGLGAARYMKQYHVNFTVFE 183
           R CI+G+G  G   A+ +     NF+ FE
Sbjct: 6   RICIVGSGNWGSTIAKIIGINAANFSNFE 34


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 596 CCLQMFLFRRTWATQE 549
           CC    + RR+W T+E
Sbjct: 344 CCKTRIIGRRSWVTRE 359


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 190 RNFGGTWHFDPH 225
           +N+GG +H D H
Sbjct: 268 KNYGGVYHLDNH 279


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 248 WPAFLACTMT*GRIRHVKPWNITTFHFPRE 337
           W  FLA       I+ +  WN+  ++FP +
Sbjct: 6   WIVFLALANG-EEIKTIYSWNVIEYNFPND 34


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 27  PSRSSCGSVCTLSSLSCRPTKNFESVHHRR 116
           PS+    ++C     S    +N +S++HR+
Sbjct: 29  PSKEPICNICKRVYSSLNSLRNHKSIYHRQ 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,289
Number of Sequences: 438
Number of extensions: 5123
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)