Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0245
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      28   1.7  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    28   1.7  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   5.0  

>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 118  LKKLR*NYLKHTRDNTVSVVQ*FFNPXXATY---IVTGRFGICIIGDNFRYIYQSLTTQW 288
            L+KL   Y K  RDN    V  +FN     Y   +  GR  I ++   F + Y  LTTQ+
Sbjct: 1065 LQKLSTQYSKIVRDNDYGNVNCWFNRDTECYRGSMQKGRKNIALLLRGF-FCYYGLTTQY 1123


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 537 YTYVGNCEVNLSFIFEIXHLVITVQSNYIPKVXNPAHV-ATIIKNRILFIVNKXSTFSTK 361
           Y   G+ E+NL FIFE   +   V  +  P   N A   A+I +  ++ +V K  +  T 
Sbjct: 263 YLEDGSGELNLDFIFEDLKVAFYVLPDLTPPSYNIAKTFASIYQECLVGLVTKAVSLDTP 322

Query: 360 XEFYI 346
              Y+
Sbjct: 323 AAVYL 327


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 174  GAVVF*PRXSNLHRNWSIWYLHYRRQF 254
            G+ +  PR +N   N+S WY  Y  +F
Sbjct: 1925 GSGIIQPRDTNYTANYSFWYDRYHFEF 1951


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,501
Number of Sequences: 5004
Number of extensions: 44144
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)