Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0245
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0272 + 1985348-1986036,1986142-1988020                           29   5.3  
11_01_0271 + 2039100-2041760                                           28   7.0  
08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714     28   9.2  

>12_01_0272 + 1985348-1986036,1986142-1988020
          Length = 855

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 24  CTVSIIVGVLGEFRNPECRSVDSIFFVYL 110
           C + ++VG++G F    CR V +  +V++
Sbjct: 604 CVILVLVGLMGAFAAGSCRKVKTSIYVFV 632


>11_01_0271 + 2039100-2041760
          Length = 886

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 24  CTVSIIVGVLGEFRNPECRSVDSIFFVYL 110
           C + ++VG++G F    CR V +  +V++
Sbjct: 639 CVILVLVGLMGAFAAGSCRKVKTSVYVFV 667


>08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714
          Length = 411

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 248 SPIMQIPNRPVTM*VAXSGLKNYCTTETVLS 156
           +P  Q PN P+ + V+  G++  C+TE VL+
Sbjct: 7   TPADQSPNAPLPVRVSEDGVEARCSTECVLA 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,283,340
Number of Sequences: 37544
Number of extensions: 254035
Number of successful extensions: 348
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)