Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0245
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16)                 29   5.4  
SB_653| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.2)                  29   5.4  

>SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16)
          Length = 1134

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 105  KRKKCYQLTCIQGSETHQEHQQ**RRCNQHLC 10
            +R  CYQ T   GS      Q    RCN+ LC
Sbjct: 1009 RRPSCYQYTASTGSFAQVSDQDYLVRCNEQLC 1040


>SB_653| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.2)
          Length = 835

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 101 EKNAIN*PAFRVPKLTKNTNNNRDGATNIFA 9
           E NA   P+F VP+    TN+ ++G  N+ A
Sbjct: 726 EGNAQQSPSFSVPQAPAKTNDKKEGGLNVVA 756


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,176,189
Number of Sequences: 59808
Number of extensions: 311767
Number of successful extensions: 483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)