Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0244
         (749 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.           107   5e-25
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    61   4e-11
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    23   7.6  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score =  107 bits (256), Expect = 5e-25
 Identities = 52/145 (35%), Positives = 81/145 (55%)
 Frame = +3

Query: 90  FKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQIXGTAGQE 269
           FKL+L+G+S VGK+ ++ RF    F     STIG  F  +T+ +    +K +I  TAGQE
Sbjct: 25  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIWDTAGQE 84

Query: 270 RFHTITTSYYRGAMGIMLVYDITNEKTFDDIVKWLRNIDEHANEDVEKMILGNKCDMEEK 449
           R+H++   YYRGA   ++VYDI N  +F     W++ +   A+ ++   + GNK D+   
Sbjct: 85  RYHSLAPMYYRGAQAAIVVYDIQNSDSFARAKTWVKELQRQASPNIVIALAGNKADLANS 144

Query: 450 RVVSKERGEAIAREHGIRFMRRRLK 524
           RVV  E  +  A ++ + FM    K
Sbjct: 145 RVVDYEEAKQYADDNRLLFMETSAK 169


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 60.9 bits (141), Expect = 4e-11
 Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 5/140 (3%)
 Frame = +3

Query: 93  KLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQIXGTAGQER 272
           K +++GD  VGKTC+L  ++ + F   ++ T   ++    V + G ++ L +  TAGQE 
Sbjct: 8   KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTSFDNYSAPMV-VDGVQVSLGLWDTAGQED 66

Query: 273 FHTITTSYYRGAMGIMLVYDITNEKTFDDIV-KWLRNIDEHANEDVEKMILGNKCDMEEK 449
           +  +    Y      ++ Y + +  +F+++  KW   I  H   D   +++G K D+ E 
Sbjct: 67  YDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEIKHHC-PDAPIILVGTKIDLRED 125

Query: 450 R----VVSKERGEAIAREHG 497
           R    +++ +   A+ RE G
Sbjct: 126 RETISLLADQGLSALKREQG 145


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1099

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 692  PTRQHSXRQHSLRQLEQWA 748
            P R  + +QH LR  E W+
Sbjct: 976  PVRPENLQQHLLRDAESWS 994


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 697,046
Number of Sequences: 2352
Number of extensions: 13041
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)