Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0243
(514 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 33 0.019
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.6
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 27 2.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 2.9
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 26 3.8
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 26 3.8
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 25 5.0
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 5.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 5.0
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 6.7
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 6.7
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 25 6.7
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 8.8
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 25 8.8
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 25 8.8
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 8.8
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 8.8
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 33.5 bits (73), Expect = 0.019
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 249 PGTASTSVDIPTSPRPSPSSKASLYLTPSTDP 344
P +A TSV TSP+PSPS S+ TP +P
Sbjct: 458 PMSAPTSVLTGTSPQPSPSLSTSIMSTPKLNP 489
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 1.6
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +3
Query: 246 PPGTASTSVDIPTSPRPSPSSKASLYL-TPSTDPFHTQLRSTXLIPSR*PCPNPTRSSNT 422
PP S+S+ P +P P+S +S + P T T S+ L + C T S T
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTST-SIPT 237
Query: 423 CHIT*RSTXRFPSTFPRHTQS 485
+ ST P+ P T S
Sbjct: 238 GGSSSLSTPITPTVPPTSTSS 258
Score = 25.4 bits (53), Expect = 5.0
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +3
Query: 246 PPGTASTSVDIPTSPRPSPSSKASLYLTPSTDPFHTQLRSTXLIPS 383
P T STS TS SS S +TP+ P T S + P+
Sbjct: 221 PLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPT 266
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 105 QLCFLSSSSHWQPLLLPAGKLSRA 34
++ L WQP+L+P GK+ RA
Sbjct: 223 EMAHLLKDPIWQPILMPNGKVLRA 246
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 374 YPVKVAVPQPYEVVKHVPYHVKEY 445
Y +K+ VP P+ ++H P HV Y
Sbjct: 2322 YSLKLDVPLPFFALEHRPTHVISY 2345
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +3
Query: 258 ASTSVDIPTSPRPSPSSKASLYLTPSTDPFHTQLRSTXLIPSR*PCPN 401
AS +++ PT P S S+ PS+ P + +++ P C N
Sbjct: 13 ASPAMETPTKASPDSKSPNSVGAIPSSSPLASSTKASTSTPFVENCSN 60
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 189 CSQRQDHQYRIHTRGSGDHVCPISSLGVQLCFLSSSSHW 73
C Q QD + DH+ ++ + Q FL SSS W
Sbjct: 277 CGQMQDQVLHFYA----DHLTELTDVSFQGAFLVSSSEW 311
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 5.0
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 255 TASTSVDIPTSPRPSPSSKA-SLYLTPSTDP 344
T STS D+PTS PS ++ A + +PS P
Sbjct: 327 TNSTSTDLPTSNLPSQNAPARPVEPSPSIQP 357
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.4 bits (53), Expect = 5.0
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = +3
Query: 264 TSVDIPTSPRPSPS--SKASLYLTPSTDP----FHTQLRSTXLIPSR*P 392
TS D P P PSPS S +L + P+ DP +++ L +T IP+ P
Sbjct: 367 TSEDPPQLP-PSPSSPSSPALSVKPNIDPQPPLYNSTLTTTRSIPANKP 414
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 246 PPGTASTSVDIPTSPRPSPSSKASLYLTPS 335
PPG A P P P+ S+ S Y P+
Sbjct: 767 PPGVAGAGPPPPPPPPPAVSAGGSRYYAPA 796
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.0 bits (52), Expect = 6.7
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Frame = +2
Query: 317 PVPYAVDRPVP----YPVEKHXPYPVKVAVPQPYEVVKHVPYH 433
P PY PV P++ H PYP P PY+
Sbjct: 190 PPPYCFQSPVSPGATVPLQHHSPYPSDNGFPGHRRQTHFAPYY 232
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +3
Query: 255 TASTSVDIPTSPRPSPS----SKASLYLTPSTDPFHTQLRST 368
++S ++PTSP + S +S+ PS+DPF + L S+
Sbjct: 70 SSSPERELPTSPSHHANTEIDSSSSMLPPPSSDPFSSPLSSS 111
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 281 DVTKTITLVKGVPVPYAVDRP 343
DV K T+V G PYA DRP
Sbjct: 523 DVVKA-TIVNGPAAPYAEDRP 542
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 24.6 bits (51), Expect = 8.8
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 484 DWVWRG-NVDGNLNVLLHVIWHVFDDLVGL 398
DW ++ ++G N+ I+ FDD++GL
Sbjct: 503 DWAFKQLEINGAKNIQTGSIFWTFDDIIGL 532
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 24.6 bits (51), Expect = 8.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 258 ASTSVDIPTSPRPSPSSKASLYLTPSTDPFHTQLRSTXLIPS 383
AS ++ + +P + A++ +P + F QLRST +PS
Sbjct: 285 ASGWTEVGKNKKPVIARSATVERSPISQIFGGQLRSTLRVPS 326
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 24.6 bits (51), Expect = 8.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 466 NVDGNLNVLLHVIWHVFDDLVGL 398
N+D N +L H WH F+D V +
Sbjct: 430 NLDYNKKIL-HASWHPFEDSVAI 451
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 24.6 bits (51), Expect = 8.8
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -2
Query: 129 CPISSLGVQLCFLSSSSHW 73
CP+S + +++CFL + H+
Sbjct: 1323 CPLSIVPLEICFLCGTPHF 1341
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 24.6 bits (51), Expect = 8.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 249 PGTASTSVDIPTSPRPSPSSKASLYLTPSTDP 344
PG +++ +P+SP SP+S + +PS P
Sbjct: 1563 PGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSP 1594
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,709,697
Number of Sequences: 5004
Number of extensions: 32706
Number of successful extensions: 153
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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