Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0243
(514 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 40 0.001
At1g26150.1 68414.m03192 protein kinase family protein similar t... 33 0.11
At5g27870.1 68418.m03343 pectinesterase family protein similar t... 33 0.15
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 29 1.8
At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00... 29 1.8
At5g59170.1 68418.m07416 proline-rich family protein contains pr... 29 2.4
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH... 29 2.4
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 28 3.2
At1g10830.1 68414.m01244 sodium symporter-related contains five ... 28 3.2
At4g38530.1 68417.m05454 phosphoinositide-specific phospholipase... 28 4.2
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 28 4.2
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 28 4.2
At3g24760.1 68416.m03108 F-box family protein ; similar to SKP... 28 4.2
At1g31250.1 68414.m03825 proline-rich family protein contains pr... 28 4.2
At5g51680.1 68418.m06407 hydroxyproline-rich glycoprotein family... 27 5.6
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 27 5.6
At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to uclacy... 27 5.6
At3g18500.1 68416.m02351 nocturnin-related contains weak similar... 27 5.6
At1g23720.1 68414.m02994 proline-rich extensin-like family prote... 27 5.6
At5g04360.1 68418.m00428 pullulanase, putative / starch debranch... 27 7.4
At3g19570.2 68416.m02482 expressed protein contains Pfam domain,... 27 7.4
At3g19570.1 68416.m02481 expressed protein contains Pfam domain,... 27 7.4
At2g40890.1 68415.m05046 cytochrome P450 98A3, putative (CYP98A3... 27 7.4
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 27 7.4
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 27 7.4
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 27 7.4
At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5) ide... 27 9.8
At5g04470.1 68418.m00445 expressed protein 27 9.8
At4g32920.1 68417.m04685 glycine-rich protein 27 9.8
At3g22070.1 68416.m02785 proline-rich family protein contains pr... 27 9.8
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 27 9.8
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 27 9.8
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 27 9.8
At1g32760.1 68414.m04039 glutaredoxin family protein contains Pf... 27 9.8
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/69 (34%), Positives = 30/69 (43%)
Frame = +3
Query: 279 PTSPRPSPSSKASLYLTPSTDPFHTQLRSTXLIPSR*PCPNPTRSSNTCHIT*RSTXRFP 458
P +P PSP S + + +PS P HT S PS P P+ S H S P
Sbjct: 204 PATPSPSPKSPSPVSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHS--PAHAPSHSPAHAP 261
Query: 459 STFPRHTQS 485
S P H+ S
Sbjct: 262 SHSPAHSPS 270
Score = 32.3 bits (70), Expect = 0.20
Identities = 22/67 (32%), Positives = 27/67 (40%)
Frame = +3
Query: 285 SPRPSPSSKASLYLTPSTDPFHTQLRSTXLIPSR*PCPNPTRSSNTCHIT*RSTXRFPST 464
SP P S + + TP+ P H S P+ P P+P S H S PS
Sbjct: 177 SPAQPPKSSSPISHTPALSPSHATSHS----PAT-PSPSPKSPSPVSHSPSHSPAHTPSH 231
Query: 465 FPRHTQS 485
P HT S
Sbjct: 232 SPAHTPS 238
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 33.1 bits (72), Expect = 0.11
Identities = 22/55 (40%), Positives = 26/55 (47%)
Frame = +3
Query: 246 PPGTASTSVDIPTSPRPSPSSKASLYLTPSTDPFHTQLRSTXLIPSR*PCPNPTR 410
PP T TS PT+P P P S SL P+ DP L L+P P +P R
Sbjct: 133 PPTTPITSPSPPTNPPPPPESPPSL---PAPDPPSNPLPPPKLVP---PSHSPPR 181
>At5g27870.1 68418.m03343 pectinesterase family protein similar to
pectinesterase (EC 3.1.1.11) from Salix gilgiana
GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
vulgaris SP|Q43111; contains Pfam profile PF01095
pectinesterase
Length = 732
Score = 32.7 bits (71), Expect = 0.15
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Frame = +3
Query: 246 PPGTASTSVDIPTSPRP----SPSSKASLYLTPSTDPFHTQLRSTXLIPSR*PCPNPTRS 413
PP T S V TSP SPS S ++PST P L S PS P+ + S
Sbjct: 629 PPATPSMVVSPSTSPPAGHLGSPSDTPSSLVSPSTSPPAGHLGSPSDTPSSVVTPSASPS 688
Query: 414 SNTCHIT*RSTXRFPSTFPRHTQSKXRCLIP 506
++ S FPS P + S + P
Sbjct: 689 TSPSASPSVSPSAFPSASPSASPSASPSVSP 719
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 254 HGLNFGGHTDVTKTITLVKGVPVPYAVDRPVPYPVEKH 367
H L GG T T T + + + PY P P PV+ H
Sbjct: 227 HILQLGGPTVSTMTTSSMPALQAPYPSGIPGPAPVQSH 264
>At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00646
F-box domain
Length = 435
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +2
Query: 314 VPVPYAVDRPVPYPVEKHXPYPVKVAVPQPYEVVKHVP 427
+P+P + P+P + H P+ +A+P P + +P
Sbjct: 355 MPMPMPMPMPMPMHMHMHMHMPMPMAMPMPMPIAMAMP 392
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +2
Query: 314 VPVPYAVDRPVPYPVEKHX----PYPVKVAVPQPYEVVKHVP 427
+P+P + P+P P+ H P P+ + +P P + +P
Sbjct: 353 MPMPMPMPMPMPMPMHMHMHMHMPMPMAMPMPMPIAMAMPMP 394
>At5g59170.1 68418.m07416 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 288
Score = 28.7 bits (61), Expect = 2.4
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +2
Query: 311 GVPVPYAVDRPVP---YPVEKHXPYPVKVAVPQPYE--VVKHVPYHVKEY 445
G PY+ +P P YP P P+K P PYE VK+ P +K Y
Sbjct: 46 GPKFPYSPPKPPPIEKYPPPVQYPPPIKKYPPPPYEHPPVKYPP-PIKTY 94
>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
(MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
thaliana}
Length = 1324
Score = 28.7 bits (61), Expect = 2.4
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +3
Query: 267 SVDIPTSPRPSPSSKASLYLTP-STDPFHTQLRSTXLIPSR*PCPNPTRSSNTCHIT*RS 443
S +SP PSPS S TP S +P + P + P NP SSN + RS
Sbjct: 28 SASSSSSPSPSPSPSLSNKKTPKSNNPNPKSPSPSPSPPKKTPKLNPNPSSN---LPARS 84
Query: 444 TXRFPSTFPRHTQSKXR 494
P T P QSK +
Sbjct: 85 PSPGPDT-PSPVQSKFK 100
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 246 PPGTASTSVDIPTSPRPSPSSKASLYLTPSTDPFHT 353
PP T V P P PSPS + +Y P P H+
Sbjct: 525 PPKVEDTRVPPPQPPMPSPSPPSPIYSPP--PPVHS 558
Score = 27.1 bits (57), Expect = 7.4
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +3
Query: 246 PPGTASTS---VDIPT-SPRPSPSSKASLYLTPSTDPFHTQLRSTXLIPSR*PCPNPTRS 413
PP T +T+ + PT + P+PSS+ + TPS++ +Q+ S P+ P + T S
Sbjct: 639 PPPTHNTNQPPMGAPTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPT--PVQSSTPS 696
Query: 414 SNTCHI 431
S +
Sbjct: 697 SEPTQV 702
>At1g10830.1 68414.m01244 sodium symporter-related contains five
transmembrane domains; Interpro IPR001991
Sodium:dicarboxylate symporter; EST gb|F13926 comes from
this gene
Length = 367
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -1
Query: 481 WVWRGNVDGNLNVLLHVIWHVFDDLVGLGHGYLDGIRXV 365
WV+ G V G + +L+V+W D+ G G ++D + +
Sbjct: 96 WVYFGVVLGVVLFILNVVW--IDNSTGFGKSFIDAVSNI 132
>At4g38530.1 68417.m05454 phosphoinositide-specific phospholipase C
nearly identical to phosphoinositide-specific
phospholipase C GI:557880 from [Arabidopsis thaliana];
contains Pfam profile: PF00388
phosphatidylinositol-specific phospholipase C
Length = 526
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 251 RHGLNFGGHTDVTKTITLVKGVPVPYAVDRPVPYPVEKHXPYPVKVAV 394
RHG H D+ K +T +K + D PV +E H P ++ V
Sbjct: 128 RHGRTLTSHEDLQKCLTAIKDNAF-HVSDYPVIITLEDHLPPKLQAQV 174
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 379 RQGSRAPTLRGRQTRAISREGVRXGSRPRSRA 474
R+ SR+P+ R + R+ SR R SRPR R+
Sbjct: 8 RRDSRSPSPRKERARSRSRSRSRSRSRPRLRS 39
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 379 RQGSRAPTLRGRQTRAISREGVRXGSRPRSRA 474
R+ SR+P+ R + R+ SR R SRPR R+
Sbjct: 8 RRDSRSPSPRKERARSRSRSRSRSRSRPRLRS 39
>At3g24760.1 68416.m03108 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 383
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 261 STSVDIPTSPRPSPSSKASLYL--TPSTDPFHTQ 356
S +P SP PSPSS L+L +T FH Q
Sbjct: 45 SLITSLPPSPSPSPSSPPWLFLFGIHNTSSFHNQ 78
>At1g31250.1 68414.m03825 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
similar to prolin rich protein GB:S44189 GI:433706 from
[Zea mays]
Length = 165
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 246 PPGTASTSVDIPTSPRPSPSSKASLYLTPSTDPF-HT 353
P GT + T P PSPS K ++ P+ PF HT
Sbjct: 132 PTGTTPNASPSLTPPNPSPSEK---FIPPNASPFIHT 165
>At5g51680.1 68418.m06407 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; similar to hydroxyproline-rich
Glycoprotein (HRGP) [Zea mays] gi|4007865|emb|CAA10387
Length = 343
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +2
Query: 311 GVPVPYAVDRP--VPYP-VEKHXPYPVKVAVPQPYEVVKHVPYHVKE 442
G P+P + + P +P+P +E P P+ VP P + V VP+ +E
Sbjct: 74 GKPLPASSNDPPQLPHPPLETATPTPLPPPVPVPVKQVTSVPFDWEE 120
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.5 bits (58), Expect = 5.6
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 246 PPGTASTSVDIPTSPRPSPSSKASLYLTPST--DPFHTQLRSTXLIPSR*PCPNPTRSSN 419
PP T ++ P+ P+PSS TPST P S +IPS P P+ S+
Sbjct: 536 PPSTPTSPGSPPSPSSPTPSSPIPSPPTPSTPPTPISPGQNSPPIIPSP-PFTGPSPPSS 594
>At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to
uclacyanin 3 GI:3395770 from [Arabidopsis thaliana];
contains Pfam profile PF02298: Plastocyanin-like domain;
identical to cDNA uclacyanin 3 (UCC3)GI:3395769
Length = 222
Score = 27.5 bits (58), Expect = 5.6
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 246 PPGTASTSVDIPTSPR-PSPSSKASLYLTPSTDPFHTQLRSTXLIPSR*PCPNPTRSSN 419
PP T ST P+ P PSPS S ++ P + S L P P P P+ S N
Sbjct: 141 PPSTPSTPSSPPSPPSPPSPSLPPSSLPPSASPPTNGTPDSETLTPPPAPLP-PSLSPN 198
Score = 27.1 bits (57), Expect = 7.4
Identities = 28/94 (29%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Frame = +3
Query: 165 IDGLDVGYXHXXXXXXXXXXXXXXXXXPPGTASTSVDIPTSPRPSPSSKASLYLTPST-- 338
ID VG H P A+ S P+SP +PS+ +S TPST
Sbjct: 90 IDLTTVGTMHFLCPTFGHCKNGMKLAVPVLAAAPSPSTPSSPPSTPSTPSSPPSTPSTPS 149
Query: 339 ------DPFHTQLRSTXLIPSR*PCPNPTRSSNT 422
P L + L PS P N T S T
Sbjct: 150 SPPSPPSPPSPSLPPSSLPPSASPPTNGTPDSET 183
>At3g18500.1 68416.m02351 nocturnin-related contains weak similarity
to Nocturnin (CCR4 protein homolog) (Swiss-Prot:O35710)
[Mus musculus]
Length = 262
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = -2
Query: 189 CS-QRQDHQYRIHTRG----SGDHVCPISSLGVQLCFLSSSS 79
CS R YRI G SG H CP+SSL + F+ SS
Sbjct: 9 CSWSRPSEAYRILPSGGHLSSGFHQCPLSSLSFRSSFVCCSS 50
>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 895
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +2
Query: 308 KGVPVPYAVDRPVPYPVEKHXPYPVKVAVPQPY 406
K P PY P P P P P + P PY
Sbjct: 556 KSPPTPYVYHSPPPPPYYSPSPKPAYKSSPPPY 588
>At5g04360.1 68418.m00428 pullulanase, putative / starch debranching
enzyme, putative similar to pullulanase [Spinacia
oleracea] GI:634093 (EC 3.2.1.41); contains Pfam
profiles PF00128: Alpha amylase catalytic domain,
PF02922: Isoamylase N-terminal domain
Length = 965
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 376 IRXVLLNWVWNGSVDGVRY 320
IR LLNWV N VDG R+
Sbjct: 533 IRDDLLNWVVNYKVDGFRF 551
>At3g19570.2 68416.m02482 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +3
Query: 246 PPGTASTSVDIPTSPRPSPSSKASLYLTPSTDPFHTQLRSTXLIPSR*PCPNPTRSSNTC 425
P G A ++ D P K L T + + R+ +PSR P+P+ S+ T
Sbjct: 6 PQGAAISNTDSKNPPPRDRQDKPQL--TANNGGLQRRPRAAKNVPSRYLSPSPSHSTTTT 63
Query: 426 HIT*RST 446
T ST
Sbjct: 64 TTTATST 70
>At3g19570.1 68416.m02481 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 627
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +3
Query: 246 PPGTASTSVDIPTSPRPSPSSKASLYLTPSTDPFHTQLRSTXLIPSR*PCPNPTRSSNTC 425
P G A ++ D P K L T + + R+ +PSR P+P+ S+ T
Sbjct: 6 PQGAAISNTDSKNPPPRDRQDKPQL--TANNGGLQRRPRAAKNVPSRYLSPSPSHSTTTT 63
Query: 426 HIT*RST 446
T ST
Sbjct: 64 TTTATST 70
>At2g40890.1 68415.m05046 cytochrome P450 98A3, putative (CYP98A3)
identical to Cytochrome P450 98A3 (SP|O22203)
[Arabidopsis thaliana]; similar to gi:17978651 from
Pinus taeda
Length = 508
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 171 HQYRIHTRGSGDHVCPISSLGVQLCFLSSSSH 76
H +R+ G+G VCP + LG+ L S SH
Sbjct: 424 HDFRLLPFGAGRRVCPGAQLGINL-VTSMMSH 454
>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 340
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 246 PPGTASTSVDIPTSPRPSPSSKASLYLTPST 338
PP S S+ +P+ P+P PSS P T
Sbjct: 197 PPPPQSLSLSLPSPPQPPPSSSFHAEPIPPT 227
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 317 PVPYAVDRPVPYPVEKHXPYPVKVAVP 397
P P + PVP+P E P PV P
Sbjct: 149 PFPLQLTHPVPFPAEPGSPDPVSPPPP 175
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 27.1 bits (57), Expect = 7.4
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +3
Query: 249 PGTASTSVDIPTSPRPSPSSKASLYLTPSTDPFHTQLRSTXLIPSR*PCPNPTRS 413
P ++S S+ P+ P SPSS L+PS+ P L PS P P P+ S
Sbjct: 29 PSSSSPSLS-PSPPSSSPSSAPPSSLSPSSPP------PLSLSPSSPPPPPPSSS 76
>At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5)
identical to pseudo-response regulator 5 GI:10281006
from [Arabidopsis thaliana]
Length = 667
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 249 PGTASTSVDIPTSPRPSPSSKASLYLTPSTDPFHTQ 356
P TA TS P S PSPSS + + PF+++
Sbjct: 526 PNTAYTSAMAPASLSPSPSSVSPHEYSSMFHPFNSK 561
>At5g04470.1 68418.m00445 expressed protein
Length = 127
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 246 PPGTASTSVDIPTSPRPSPSSKASLYLTPSTDPFHTQLRSTXLIPSR 386
PP TA+T P PRP PS+ +SL + T L +I ++
Sbjct: 44 PPTTATTPPPPPQKPRP-PSTPSSLGIRSCKRKLMTSLSKYEIIVNK 89
>At4g32920.1 68417.m04685 glycine-rich protein
Length = 1432
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +2
Query: 2 DPPLKRHNENSALLSFPAGSSSGCQ 76
+P LKRH L F A SSS CQ
Sbjct: 1157 NPALKRHGVRVDLARFQALSSSSCQ 1181
>At3g22070.1 68416.m02785 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 178
Score = 26.6 bits (56), Expect = 9.8
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 261 STSVDIPTSPRPSPSSKASLYLTPSTDPFHTQLRSTXLIPSR*PCPNPTRSSNT 422
S+S D P+S S SS S ++TP +P + ++ S P P + SS +
Sbjct: 44 SSSTD-PSSSSSSSSSSTSPFITPFPNPNPNPNPNPPVLGSSPPSPTDSSSSTS 96
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 26.6 bits (56), Expect = 9.8
Identities = 21/47 (44%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = +2
Query: 317 PVPYAVDRPV----PYPVEKHXPYPVKVAVPQPYEVVKHVPYHVKEY 445
PV Y PV P PV K P PVK P P V K P VK Y
Sbjct: 81 PVKYYSPPPVYKSPPPPVYKSPPPPVKHYSPPP--VYKSPPPPVKHY 125
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 26.6 bits (56), Expect = 9.8
Identities = 21/47 (44%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = +2
Query: 317 PVPYAVDRPV----PYPVEKHXPYPVKVAVPQPYEVVKHVPYHVKEY 445
PV Y PV P PV K P PVK P P V K P VK Y
Sbjct: 81 PVKYYSPPPVYKSPPPPVYKSPPPPVKHYSPPP--VYKSPPPPVKHY 125
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 26.6 bits (56), Expect = 9.8
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +3
Query: 246 PPGTASTSVDIPTSPRPSPSSKASLYLTPSTDPFHTQLRSTXLIPSR*PCPNPTR 410
PP T ++ P SP P+P+S ++P Q S +P P P PT+
Sbjct: 125 PPPTPASPPPAPASPPPAPASPPPAPVSPPP----VQAPSPISLPPA-PAPAPTK 174
>At1g32760.1 68414.m04039 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 314
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 279 PTSPRPSPSSKASLYLTPSTDP 344
P+ P PS SS A +TP T P
Sbjct: 48 PSPPSPSSSSSAKSVITPMTPP 69
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,369,146
Number of Sequences: 28952
Number of extensions: 195949
Number of successful extensions: 970
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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