Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0241
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0693 - 26334574-26336121                                         31   0.79 
04_04_1267 - 32257035-32257337,32257423-32257570,32257656-322578...    29   3.2  
11_06_0232 + 21559467-21559532,21559586-21560200                       29   5.5  
01_07_0198 - 41918276-41918408,41918486-41918841,41919091-419192...    29   5.5  
08_02_1418 - 26931896-26932339,26932435-26932668,26932805-269331...    28   9.7  

>11_06_0693 - 26334574-26336121
          Length = 515

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +2

Query: 11  PTRKR*KPFKLFCVFSWRLCMPTKPQSPTPNSKTIFTTASSLPITTIPLKR 163
           P R+R  P +L   F+ R C+P+ P SP  +S       SS P   +PL R
Sbjct: 38  PARRR--PLELLA-FAVRHCLPSSPPSPHHHSLAALLLLSSPPPPALPLLR 85


>04_04_1267 - 32257035-32257337,32257423-32257570,32257656-32257893,
            32257994-32258351,32258791-32258969,32259071-32259175,
            32259539-32260871
          Length = 887

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +2

Query: 41   LFCVFSWRLCMPTKPQSPTPNSKTIF---TTASSLPITTIPLKRANRSTRTRRAKSSQMS 211
            L C+    LC+   P +  P S  +F     A++LP    P+  A+R++  +++  +  S
Sbjct: 815  LLCIHIGLLCVQDNPNNRPPMSSVVFMLENEAAALPAPIQPVYFAHRASGAKQSGGNTSS 874

Query: 212  *TNSYETT 235
              N+   T
Sbjct: 875  SNNNMSLT 882


>11_06_0232 + 21559467-21559532,21559586-21560200
          Length = 226

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 89  SPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYET 232
           +P P ++T    ASS P  T P +  +R  R RRA+++Q    +S  T
Sbjct: 141 TPRPRARTRGAPASSFPGATTPQRTPDR--RGRRARAAQQGEASSRAT 186


>01_07_0198 -
           41918276-41918408,41918486-41918841,41919091-41919237,
           41919666-41921789,41922150-41922344,41922488-41922568,
           41923325-41923414,41923507-41923593,41923914-41923961
          Length = 1086

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 658 YNSRIQRGRWCSLRAQPTPGGKPHWRSGLQLGR 756
           Y+ + ++  + S R  P P G  HW SGL + R
Sbjct: 768 YSKKNKKFEFNSTRVSPVPNGSSHW-SGLNISR 799


>08_02_1418 -
           26931896-26932339,26932435-26932668,26932805-26933110,
           26933462-26933644,26934386-26934493
          Length = 424

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +1

Query: 529 DVGSSNYPEP*P---HGPTGSTASKDLRPNGTLXPAKYDNDVLFF 654
           DVG S+     P   HG TG   +KD+  NG L   KY +  + +
Sbjct: 124 DVGESSNLSEWPGGQHGSTGLPLTKDVLVNGVLVKVKYCHTCMLY 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,242,871
Number of Sequences: 37544
Number of extensions: 384180
Number of successful extensions: 1291
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)