Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0241
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot...    36   0.040
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890...    32   0.38 
At4g39510.1 68417.m05587 cytochrome P450 family protein contains...    31   1.1  
At2g17260.1 68415.m01993 glutamate receptor family protein (GLR3...    30   2.0  
At3g27710.1 68416.m03460 zinc finger protein-related contains si...    29   3.5  
At1g71230.1 68414.m08220 COP9 signalosome subunit 5A / CSN subun...    29   3.5  
At2g28150.1 68415.m03419 expressed protein                             29   4.6  
At3g27720.1 68416.m03461 zinc finger protein-related contains Pf...    28   6.1  
At1g02475.1 68414.m00198 expressed protein                             28   6.1  
At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3...    28   8.1  
At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3...    28   8.1  
At4g13040.1 68417.m02035 AP2 domain-containing transcription fac...    28   8.1  
At3g26280.1 68416.m03279 cytochrome P450 family protein identica...    28   8.1  

>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
           protein, Xenopus laevis, PIR:T30335
          Length = 1229

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +1

Query: 13  DAQKMKT-VQVILCLFVASLYANETSVSDSKLEDDLYNSI--LVADYDHSVEKSKQIYED 183
           D  ++KT VQ I C+      A+ET++  SK  DDL   I  L+ D +  +E  +Q+ E+
Sbjct: 711 DQMEVKTMVQAIACVSQREAEAHETAIKLSKENDDLRQKIKVLIEDNNKLIELYEQVAEE 770

Query: 184 KKSEVITNVVNKLIRNN 234
             S     +      NN
Sbjct: 771 NSSRAWGKIETDSSSNN 787


>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 509

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
 Frame = +1

Query: 22  KMKTVQVILCLFVASLYANETSVSDSKL-EDDLYNSILVADYDHSVEKSKQIYEDKKSEV 198
           K KT Q +LC+   +++    S + +++  D++ + I+  DYD  V+ S  I  ++ S +
Sbjct: 398 KGKTFQFLLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQDSLM 457

Query: 199 ITNVVN 216
           +TN V+
Sbjct: 458 LTNGVD 463


>At4g39510.1 68417.m05587 cytochrome P450 family protein contains
           Pfam PF00067: Cytochrome P450; similar to  Cytochrome
           P450 86A2 (SP:O23066) [Arabidopsis thaliana]
          Length = 508

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 336 NNIKLMYKRDGLALTLDDENSNDGRLAYG-DGKDKTSPKVSWKFVPLWENNKVYFKIVK 509
           ++IKL   +  L    DD+   D  LA+   G+D TS  +SW F  L EN +V  KI K
Sbjct: 281 SHIKLDTTKYELLNPSDDKFLRDTILAFNLAGRDTTSSALSWFFWLLSENPQVVTKIRK 339


>At2g17260.1 68415.m01993 glutamate receptor family protein (GLR3.1)
           (GLR2) identical to putative glutamate receptor GLR2
           [Arabidopsis thaliana] gi|4185740|gb|AAD09174; plant
           glutamate receptor family, PMID:11379626
          Length = 951

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +3

Query: 363 DGLALTLDDENSNDGRLAYGDGKDKTSPKVSWKFV 467
           D +AL  DD+NS +G  A GD  ++   K+S+K V
Sbjct: 194 DVVALYNDDDNSRNGVTALGDELEERRCKISYKAV 228


>At3g27710.1 68416.m03460 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 537

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +1

Query: 70  YANETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCM 249
           Y  +  +   KLED L  SIL     +S  K ++++  K+   +T+ VN+L  + ++   
Sbjct: 353 YRYKAHIDSLKLEDKLRKSILEKAVSNSETKDQKVF--KEYSWVTDAVNRLFISRRILSQ 410

Query: 250 E*PTSY 267
             P ++
Sbjct: 411 SYPFAF 416


>At1g71230.1 68414.m08220 COP9 signalosome subunit 5A / CSN subunit
           5A (CSN5A) / c-JUN coactivator protein AJH2, putative
           (AJH2) COP9 complex subunit CSN5-2; identical to c-Jun
           coactivator protein AJH2 GI:3641312 from [Arabidopsis
           thaliana]; identical to cDNA CSN complex subunit 5A
           (CSN5A) GI:18056660; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 358

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 375 LTLDDENSNDGRLAYGDGKDKTSPKVSWKFVPLWENNKVYFKIVKLSVISI 527
           LT+D  +S    + Y D   +T     ++    WEN+  YFK VK+S +++
Sbjct: 20  LTVDSPDSTSDNIFYYDDTSQTR----FQQEKPWENDPHYFKRVKISALAL 66


>At2g28150.1 68415.m03419 expressed protein
          Length = 540

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +1

Query: 106 EDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCME*PTS 264
           EDDL   IL A+ +  V K  +++++  S+  + +VN   +N K   +E P+S
Sbjct: 102 EDDL---ILPANGNEYVLKGSELFDESNSDHFSPIVNLATQNMKQIVVEPPSS 151


>At3g27720.1 68416.m03461 zinc finger protein-related contains
           Pfam:PF01485 IBR domain
          Length = 493

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +1

Query: 70  YANETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKM 240
           Y  +  +   KLED L  SIL     +S  K ++++  K+   I + VN+L R+ ++
Sbjct: 313 YRYKAHIDSLKLEDKLKKSILKKAVLNSETKDQKVF--KEYSWIIDAVNRLFRSRRI 367


>At1g02475.1 68414.m00198 expressed protein
          Length = 219

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 685 WCSLRAQPTPGGKPHWRS 738
           W +   QPTP  K HWRS
Sbjct: 139 WLARNLQPTPNQKIHWRS 156


>At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3.2)
           (GLUR2) identical to putative glutamate receptor
           like-protein GLUR2 [Arabidopsis thaliana]
           gi|13160471|gb|AAK13248; plant glutamate receptor
           family, PMID:11379626
          Length = 912

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 369 LALTLDDENSNDGRLAYGDGKDKTSPKVSWKFV 467
           +AL  DD+NS +G  A GD  +    K+S+K V
Sbjct: 166 IALYNDDDNSRNGITALGDELEGRRCKISYKAV 198


>At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3.2)
           (GLUR2) identical to putative glutamate receptor
           like-protein GLUR2 [Arabidopsis thaliana]
           gi|13160471|gb|AAK13248; plant glutamate receptor
           family, PMID:11379626
          Length = 912

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 369 LALTLDDENSNDGRLAYGDGKDKTSPKVSWKFV 467
           +AL  DD+NS +G  A GD  +    K+S+K V
Sbjct: 166 IALYNDDDNSRNGITALGDELEGRRCKISYKAV 198


>At4g13040.1 68417.m02035 AP2 domain-containing transcription factor
           family protein contains Pfam profile PF00847: AP2 domain
          Length = 226

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +2

Query: 92  PTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSY 226
           P PN++  +    +  +TT+ +++     R+RR +S  M   + Y
Sbjct: 36  PNPNARAAYNPGPAETVTTVIVEKKAIEERSRRTRSKHMHFRSDY 80


>At3g26280.1 68416.m03279 cytochrome P450 family protein identical
           to cytochrome P450 monooxygenase (CYP71B4) GB:D78603
           [Arabidopsis thaliana] (Plant Mol. Biol. 37 (1), 39-52
           (1998))
          Length = 504

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +2

Query: 446 KSQLEVRSSVG-EQQGLLQDCETQRNQYLTLAVRTT 550
           K+Q E+R+ +G +Q+G + + +  + QYL L V+ T
Sbjct: 330 KAQDEIRTCIGIKQEGRIMEEDLDKLQYLKLVVKET 365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,315,094
Number of Sequences: 28952
Number of extensions: 303055
Number of successful extensions: 1067
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)